HL_9OFV_081
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_081 not in the Motif Atlas
- Geometric match to HL_8WND_005
- Geometric discrepancy: 0.3297
- The information below is about HL_8WND_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9OFV|1|y|G|53
9OFV|1|y|U|54
9OFV|1|y|U|55
9OFV|1|y|C|56
9OFV|1|y|G|57
9OFV|1|y|A|58
9OFV|1|y|U|59
9OFV|1|y|U|60
9OFV|1|y|C|61
Current chains
- Chain y
- Ala tRNA
Nearby chains
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- Large ribosomal subunit protein uL5A
Coloring options: