HL_9OGY_013

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OGY_013 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.1009

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9OGY|1|2|C|618
9OGY|1|2|A|619
9OGY|1|2|G|620
9OGY|1|2|C|621
9OGY|1|2|C|622
9OGY|1|2|G|623

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

uS12