RNA 3D Hub //

9OGY Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9OGY_0051/2/288:295No text annotation
homologous
HL_9PN5_082
HL_67772.3
HL_9OGY_0061/2/377:387No text annotation
geometric
HL_8GLP_091
HL_50525.1
HL_9OGY_0071/2/416:421No text annotation
homologous
HL_9PN5_085
HL_34789.6
HL_9OGY_0091/2/462:467No text annotation
homologous
HL_9H3G_087
HL_61337.6
HL_9OGY_0171/2/994:999No text annotation
homologous
HL_9PN5_096
HL_34789.6
HL_9OGY_0201/2/1141:1146No text annotation
homologous
HL_9H3G_097
HL_34789.6

Problematic loops

#loop idProblemSequence
HL_9OGY_001No text annotation
HL_9OGY_002No text annotation
HL_9OGY_003No text annotation
HL_9OGY_004No text annotation
HL_9OGY_008No text annotation
HL_9OGY_010No text annotation
HL_9OGY_011No text annotation
HL_9OGY_012No text annotation
HL_9OGY_013No text annotation
HL_9OGY_014No text annotation
HL_9OGY_015No text annotation
HL_9OGY_016No text annotation
HL_9OGY_018No text annotation
HL_9OGY_019No text annotation
HL_9OGY_021No text annotation
HL_9OGY_022No text annotation
HL_9OGY_023No text annotation
HL_9OGY_024No text annotation
HL_9OGY_025No text annotation
HL_9OGY_026No text annotation
HL_9OGY_027No text annotation
HL_9OGY_028No text annotation
HL_9OGY_029No text annotation
HL_9OGY_030No text annotation
HL_9OGY_031No text annotation
HL_9OGY_032No text annotation
HL_9OGY_033No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9OGY_0051/2/57:62,
1/2/86:88		No text annotation
homologous
IL_9PN5_147
IL_61299.8
IL_9OGY_0101/2/116:121,
1/2/343:347		No text annotation
homologous
IL_9PN5_151
IL_31545.3
IL_9OGY_0171/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
homologous
IL_9PN5_159
IL_46174.6
IL_9OGY_0181/2/366:371,
1/2/393:394		No text annotation
geometric
IL_8GLP_211
IL_01372.3
IL_9OGY_0191/2/411:413,
1/2/424:429		No text annotation
homologous
IL_9H3G_175
IL_93336.3
IL_9OGY_0311/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
homologous
IL_9H3G_188
IL_01003.6
IL_9OGY_0321/2/665:671,
1/2/1161:1162		No text annotation
homologous
IL_9PN5_174
IL_20847.3
IL_9OGY_0331/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_9PN5_175
IL_01003.6
IL_9OGY_0341/2/676:680,
1/2/1025:1029		No text annotation
homologous
IL_9H3G_191
IL_05821.3
IL_9OGY_0361/2/802:804,
1/2/859:863		8-nt loop receptor
geometric
IL_6CK5_002
IL_70784.2
IL_9OGY_0371/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
homologous
IL_9PN5_179
IL_71625.5
IL_9OGY_0381/2/807:815,
1/2/849:856		No text annotation
homologous
IL_9H3G_194
IL_59049.4
IL_9OGY_0421/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
homologous
IL_9PN5_182
IL_74641.4
IL_9OGY_0431/2/925:927,
1/2/1014:1017		Isolated non-canonical cWW pair
homologous
IL_9PN5_183
IL_01003.6
IL_9OGY_0441/2/928:931,
1/2/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_9H3G_199
IL_15225.4
IL_9OGY_0451/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_9PN5_185
IL_15225.4
IL_9OGY_0461/2/942:945,
1/2/981:984		Tandem non-canonical cWW pairs
homologous
IL_9PN5_186
IL_15225.4
IL_9OGY_0471/2/952:956,
1/2/967:974		Kink-turn
homologous
IL_9H3G_202
IL_71972.2
IL_9OGY_0481/2/1041:1047,
1/2/1071:1074		No text annotation
IL_9OGY_0501/2/1091:1093,
1/2/1152:1158		No text annotation
homologous
IL_9H3G_205
IL_82706.4
IL_9OGY_0511/2/1098:1103,
1/2/1129:1134		No text annotation
geometric
IL_3IGI_015
IL_02020.1
IL_9OGY_0521/2/1108:1110,
1/2/1123:1124		Single stack bend
homologous
IL_9H3G_207
IL_15011.5
IL_9OGY_0531/2/1168:1176,
1/2/1185:1191		No text annotation

Problematic loops

#loop idProblemSequence
IL_9OGY_001Isolated non-canonical cWW pair
IL_9OGY_002Isolated non-canonical cWW pair
IL_9OGY_003No text annotation
IL_9OGY_004Minor groove platform
IL_9OGY_006No text annotation
IL_9OGY_007Isolated non-canonical cWW pair
IL_9OGY_008Isolated non-canonical cWW pair
IL_9OGY_009No text annotation
IL_9OGY_011No text annotation
IL_9OGY_012No text annotation
IL_9OGY_013No text annotation
IL_9OGY_014Single bulged A
IL_9OGY_015No text annotation
IL_9OGY_016Single stack bend
IL_9OGY_020Isolated cWH basepair
IL_9OGY_021Isolated non-canonical cWW pair
IL_9OGY_022Single bulged U
IL_9OGY_023No text annotation
IL_9OGY_024Single bulged G
IL_9OGY_025No text annotation
IL_9OGY_026No text annotation
IL_9OGY_027No text annotation
IL_9OGY_028Tandem non-canonical cWW pairs
IL_9OGY_029No text annotation
IL_9OGY_030Kink-turn related
IL_9OGY_035No text annotation
IL_9OGY_039Single stack bend
IL_9OGY_040Isolated non-canonical cWW pair
IL_9OGY_041Isolated non-canonical cWW pair
IL_9OGY_049No text annotation
IL_9OGY_054No text annotation
IL_9OGY_055Isolated non-canonical cWW pair
IL_9OGY_056Minor groove platform
IL_9OGY_057No text annotation
IL_9OGY_058No text annotation
IL_9OGY_059Single bulged U
IL_9OGY_060No text annotation
IL_9OGY_061No text annotation
IL_9OGY_062No text annotation
IL_9OGY_063Single bulged A
IL_9OGY_064Isolated cWH basepair
IL_9OGY_065Minor groove platform
IL_9OGY_066No text annotation
IL_9OGY_067No text annotation
IL_9OGY_068Single bulged G
IL_9OGY_069Single stack bend
IL_9OGY_070Isolated non-canonical cWW pair
IL_9OGY_071No text annotation
IL_9OGY_072No text annotation
IL_9OGY_073No text annotation
IL_9OGY_074No text annotation
IL_9OGY_075No text annotation
IL_9OGY_076No text annotation
IL_9OGY_077Single bulged U
IL_9OGY_078Isolated non-canonical cWW pair
IL_9OGY_079No text annotation
IL_9OGY_080Double sheared
IL_9OGY_081Isolated non-canonical cWW pair
IL_9OGY_082No text annotation
IL_9OGY_083No text annotation
IL_9OGY_084No text annotation
IL_9OGY_085No text annotation
IL_9OGY_086Stack and bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9OGY_0021/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_9H3G_032
J3_97642.4
J3_9OGY_0031/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_9H3G_033
NA
J3_9OGY_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
homologous
J3_9H3G_034
NA
J4_9OGY_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_9PN5_010
J4_15241.4
J4_9OGY_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_9PN5_011
J4_14595.3
J5_9OGY_0041/2/123:129,
1/2/183:185,
1/2/214:219,
1/2/302:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_9OGY_001No text annotation
J3_9OGY_005No text annotation
J3_9OGY_006No text annotation
J3_9OGY_007No text annotation
J3_9OGY_008No text annotation
J3_9OGY_009No text annotation
J3_9OGY_010No text annotation
J3_9OGY_011No text annotation
J3_9OGY_012No text annotation
J4_9OGY_003No text annotation
J5_9OGY_001No text annotation
J5_9OGY_002No text annotation
J5_9OGY_003No text annotation

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