HL_9OGY_015

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9OGY|1|2|A|886

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|884
9OGY|1|2|U|885
9OGY|1|2|A|886
9OGY|1|2|U|887
9OGY|1|2|U|888
9OGY|1|2|U|889
9OGY|1|2|U|890
9OGY|1|2|G|891
9OGY|1|2|U|892
9OGY|1|2|U|893
9OGY|1|2|G|894
9OGY|1|2|G|895
9OGY|1|2|U|896
9OGY|1|2|U|897
9OGY|1|2|U|898
9OGY|1|2|U|899
9OGY|1|2|C|900
9OGY|1|2|G|901
9OGY|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6