HL_9OGY_016

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OGY_016 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.2969

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9OGY|1|2|A|957
9OGY|1|2|G|958
9OGY|1|2|G|959
9OGY|1|2|U|960
9OGY|1|2|G|961
9OGY|1|2|A|962
9OGY|1|2|A|963
9OGY|1|2|A|964
9OGY|1|2|U|965
9OGY|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein S14