HL_9OGY_027

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OGY_027 not in the Motif Atlas

Homologous match to HL_9PN5_107

Geometric discrepancy: 0.3816

The information below is about HL_9PN5_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9OGY|1|2|C|1565
9OGY|1|2|G|1566
9OGY|1|2|G|1567
9OGY|1|2|C|1568
9OGY|1|2|A|1569
9OGY|1|2|G|1570

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

uS13

Chain U

eS19