HL_9OGY_031

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUUGGGAAAAC

Length

12 nucleotides

Bulged bases

9OGY|1|A|U|9230

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|A|G|9227
9OGY|1|A|C|9228
9OGY|1|A|U|9229
9OGY|1|A|U|9230
9OGY|1|A|G|9231
9OGY|1|A|G|9232
9OGY|1|A|G|9233
9OGY|1|A|A|9234
9OGY|1|A|A|9235
9OGY|1|A|A|9236
9OGY|1|A|A|9237
9OGY|1|A|C|9238

Current chains

Chain A

Megrivirus E 3' IRES RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

40S ribosomal protein S3a

Chain c

40S ribosomal protein S27