HL_9OJM_007

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OJM_007 not in the Motif Atlas

Geometric match to HL_8QYX_073

Geometric discrepancy: 0.0654

The information below is about HL_8QYX_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9OJM|1|A|A|768
9OJM|1|A|G|769
9OJM|1|A|C|770
9OJM|1|A|A|771
9OJM|1|A|A|772
9OJM|1|A|U|773

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS15m

Chain N

Small ribosomal subunit protein uS17m