RNA 3D Hub //

9OJM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9OJM_0011/5/13:22tRNA D-loop
geometric
HL_3FOZ_004
HL_45175.1
HL_9OJM_0021/5/31:39No text annotation
geometric
HL_5J8B_109
HL_81376.4
HL_9OJM_0041/A/654:664No text annotation
homologous
HL_6CZR_072
NA
HL_9OJM_0051/A/701:708No text annotation
HL_9OJM_0071/A/768:773No text annotation
geometric
HL_8QYX_073
HL_34789.6
HL_9OJM_0081/A/792:796No text annotation
geometric
HL_6U8D_003
HL_01957.1
HL_9OJM_0091/A/804:809No text annotation
HL_9OJM_0101/A/842:847GNRA
homologous
HL_6CZR_081
NA
HL_9OJM_0111/A/894:899GNRA variation
homologous
HL_6CZR_216
NA
HL_9OJM_0121/A/989:998No text annotation
geometric
HL_8B0X_014
HL_38491.4
HL_9OJM_0131/A/1023:1028No text annotation
geometric
HL_9H3G_094
HL_34789.6
HL_9OJM_0141/A/1074:1084No text annotation
homologous
HL_6CZR_088
NA
HL_9OJM_0151/A/1115:1126No text annotation
HL_9OJM_0161/A/1150:1155No text annotation
geometric
HL_5E08_001
HL_89167.4
HL_9OJM_0171/A/1217:1226No text annotation
homologous
HL_6CZR_092
NA
HL_9OJM_0181/A/1281:1287No text annotation
geometric
HL_9AXU_017
HL_37569.4
HL_9OJM_0191/A/1310:1315No text annotation
HL_9OJM_0201/A/1373:1379No text annotation
HL_9OJM_0211/A/1399:1407T-loop with 2 stacked bulged bases
geometric
HL_4YCP_003
HL_33597.6
HL_9OJM_0221/A/1440:1450No text annotation
HL_9OJM_0231/A/1522:1528No text annotation
geometric
HL_7ENI_002
HL_21043.1
HL_9OJM_0241/A/1580:1585GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_9OJM_003No text annotation
HL_9OJM_006No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9OJM_0031/A/649:651,
1/A/667:668		No text annotation
IL_9OJM_0041/A/674:676,
1/A/921:923		No text annotation
geometric
IL_8GLP_063
IL_71625.5
IL_9OJM_0051/A/685:686,
1/A/859:861		Single bulged A
homologous
IL_6CZR_114
NA
IL_9OJM_0061/A/690:692,
1/A/822:823		Single bulged A
geometric
IL_4R4V_004
IL_14190.4
IL_9OJM_0071/A/694:696,
1/A/819:820		Minor groove platform
homologous
IL_6CZR_116
NA
IL_9OJM_0081/A/727:729,
1/A/744:747		No text annotation
geometric
IL_9DFE_030
IL_05502.2
IL_9OJM_0091/A/729:732,
1/A/742:744		No text annotation
geometric
IL_9DFE_030
IL_05502.2
IL_9OJM_0101/A/756:761,
1/A/779:786		Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.6
IL_9OJM_0111/A/762:765,
1/A/777:778		Major groove platform; stack outside cWW
geometric
IL_1NTA_003
IL_74641.4
IL_9OJM_0121/A/762:766,
1/A/775:778		No text annotation
IL_9OJM_0131/A/765:766,
1/A/775:777		No text annotation
IL_9OJM_0141/A/830:832,
1/A/855:856		Single bulged U
homologous
IL_6CZR_126
NA
IL_9OJM_0151/A/834:838,
1/A/852:853		C-loop
homologous
IL_6CZR_127
NA
IL_9OJM_0161/A/838:839,
1/A/850:852		Single bulged G
homologous
IL_6CZR_358
NA
IL_9OJM_0171/A/876:885,
1/A/910:913		No text annotation
IL_9OJM_0181/A/887:893,
1/A/900:908		Kink-turn related
homologous
IL_6CZR_133
NA
IL_9OJM_0191/A/935:941,
1/A/1133:1134		No text annotation
homologous
IL_6CZR_134
NA
IL_9OJM_0201/A/946:950,
1/A/1044:1049		No text annotation
IL_9OJM_0211/A/952:968,
1/A/1036:1042		No text annotation
IL_9OJM_0221/A/974:980,
1/A/1008:1014		No text annotation
IL_9OJM_0231/A/982:984,
1/A/1004:1006		Isolated non-canonical cWW pair
geometric
IL_8OI5_023
IL_01003.6
IL_9OJM_0241/A/986:988,
1/A/999:1002		No text annotation
IL_9OJM_0251/A/1020:1022,
1/A/1029:1030		Other IL
geometric
IL_3WBM_004
IL_18188.1
IL_9OJM_0261/A/1062:1066,
1/A/1092:1093		Left turn
homologous
IL_6CZR_144
NA
IL_9OJM_0271/A/1067:1071,
1/A/1087:1091		No text annotation
geometric
IL_9H3G_204
IL_05821.3
IL_9OJM_0281/A/1109:1111,
1/A/1130:1132		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.6
IL_9OJM_0291/A/1139:1147,
1/A/1158:1164		No text annotation
IL_9OJM_0301/A/1175:1176,
1/A/1477:1479		Single bulged A
homologous
IL_6CZR_147
NA
IL_9OJM_0311/A/1178:1180,
1/A/1474:1475		Single bulged G
homologous
IL_6CZR_148
NA
IL_9OJM_0321/A/1186:1190,
1/A/1464:1468		No text annotation
IL_9OJM_0331/A/1208:1209,
1/A/1355:1357		Minor groove platform
geometric
IL_6DTD_003
IL_41261.1
IL_9OJM_0341/A/1244:1252,
1/A/1340:1345		No text annotation
IL_9OJM_0351/A/1253:1255,
1/A/1338:1339		No text annotation
homologous
IL_6CZR_152
NA
IL_9OJM_0361/A/1257:1261,
1/A/1334:1336		No text annotation
homologous
IL_6CZR_154
NA
IL_9OJM_0371/A/1262:1263,
1/A/1329:1333		Minor groove platform
homologous
IL_6CZR_155
NA
IL_9OJM_0381/A/1265:1266,
1/A/1325:1327		Single bulged U
homologous
IL_6CZR_156
NA
IL_9OJM_0391/A/1266:1268,
1/A/1323:1325		Isolated non-canonical cWW pair
homologous
IL_6CZR_157
NA
IL_9OJM_0401/A/1274:1277,
1/A/1298:1301		Double sheared
geometric
IL_4LFB_067
IL_58355.4
IL_9OJM_0411/A/1278:1279,
1/A/1289:1297		No text annotation
IL_9OJM_0421/A/1388:1393,
1/A/1413:1418		No text annotation
IL_9OJM_0431/A/1483:1485,
1/A/1566:1569		No text annotation
homologous
IL_6CZR_165
NA
IL_9OJM_0441/A/1485:1488,
1/A/1562:1566		No text annotation
homologous
IL_6CZR_368
NA
IL_9OJM_0451/A/1489:1491,
1/A/1559:1561		Isolated non-canonical cWW pair
geometric
IL_8GLP_276
IL_01003.6
IL_9OJM_0461/A/1491:1495,
1/A/1554:1559		Partly complementary
homologous
IL_6CZR_167
NA
IL_9OJM_0471/A/1500:1503,
1/A/1547:1549		No text annotation
geometric
IL_4PDQ_003
IL_41344.1
IL_9OJM_0481/A/1507:1510,
1/A/1540:1543		Tandem non-canonical cWW pairs
geometric
IL_8CRE_475
IL_71194.4
IL_9OJM_0491/A/1510:1511,
1/A/1538:1540		No text annotation
geometric
IL_8GLP_269
IL_05642.5
IL_9OJM_0501/A/1511:1514,
1/A/1535:1538		No text annotation
IL_9OJM_0511/A/1516:1521,
1/A/1529:1533		No text annotation

Problematic loops

#loop idProblemSequence
IL_9OJM_001Isolated non-canonical cWW pair
IL_9OJM_002Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9OJM_0011/A/677:680,
1/A/866:872,
1/A/917:920		No text annotation
J3_9OJM_0021/A/687:690,
1/A/823:830,
1/A/856:858		No text annotation
J3_9OJM_0031/A/973:974,
1/A/1014:1020,
1/A/1030:1031		No text annotation
J3_9OJM_0041/A/1192:1194,
1/A/1428:1434,
1/A/1456:1462		No text annotation
J3_9OJM_0051/A/1198:1201,
1/A/1364:1366,
1/A/1421:1424		No text annotation
homologous
J3_6CZR_019
NA
J3_9OJM_0061/A/1210:1216,
1/A/1227:1238,
1/A/1351:1354		No text annotation
J3_9OJM_0071/A/1268:1273,
1/A/1302:1308,
1/A/1317:1323		No text annotation
homologous
J3_6CZR_023
NA
J3_9OJM_0081/A/1366:1370,
1/A/1382:1388,
1/A/1418:1421		No text annotation
J4_9OJM_0011/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66		No text annotation
J4_9OJM_0021/A/698:701,
1/A/708:715,
1/A/800:802,
1/A/811:817		No text annotation
J4_9OJM_0031/A/717:724,
1/A/750:753,
1/A/789:791,
1/A/797:798		No text annotation
J4_9OJM_0041/A/941:943,
1/A/1052:1057,
1/A/1098:1109,
1/A/1132:1133		No text annotation
homologous
J4_6CZR_013
NA

Problematic loops

No problematic loops


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