HL_9OJM_008

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUAG

Length

5 nucleotides

Bulged bases

9OJM|1|A|C|793, 9OJM|1|A|A|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OJM_008 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1018

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01957.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

9OJM|1|A|C|792
9OJM|1|A|C|793
9OJM|1|A|U|794
9OJM|1|A|A|795
9OJM|1|A|G|796

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain M

Small ribosomal subunit protein bS16m

Chain T

Small ribosomal subunit protein mS25