HL_9OJM_013

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OJM_013 not in the Motif Atlas

Geometric match to HL_9H3G_094

Geometric discrepancy: 0.0752

The information below is about HL_9H3G_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9OJM|1|A|C|1023
9OJM|1|A|G|1024
9OJM|1|A|A|1025
9OJM|1|A|A|1026
9OJM|1|A|A|1027
9OJM|1|A|G|1028

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain L

Small ribosomal subunit protein uS15m

Chain Q

28S ribosomal protein S21, mitochondrial