HL_9OJM_017
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAUAAACCCC
- Length
- 10 nucleotides
- Bulged bases
- 9OJM|1|A|C|1225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OJM_017 not in the Motif Atlas
- Homologous match to HL_6CZR_092
- Geometric discrepancy: 0.3503
- The information below is about HL_6CZR_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9OJM|1|A|G|1217
9OJM|1|A|A|1218
9OJM|1|A|U|1219
9OJM|1|A|A|1220
9OJM|1|A|A|1221
9OJM|1|A|A|1222
9OJM|1|A|C|1223
9OJM|1|A|C|1224
9OJM|1|A|C|1225
9OJM|1|A|C|1226
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain 5
- RNA (71-MER)
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain G
- Small ribosomal subunit protein uS9m
- Chain H
- Small ribosomal subunit protein uS10m
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