HL_9OJM_018

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9OJM|1|A|A|1283, 9OJM|1|A|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OJM_018 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.3522

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9OJM|1|A|U|1281
9OJM|1|A|G|1282
9OJM|1|A|A|1283
9OJM|1|A|U|1284
9OJM|1|A|G|1285
9OJM|1|A|A|1286
9OJM|1|A|A|1287

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2m

Chain D

28S ribosomal protein S5, mitochondrial

Chain E

28S ribosomal protein S6, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial