HL_9OJM_023

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

9OJM|1|A|C|1525, 9OJM|1|A|U|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OJM_023 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.1656

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

9OJM|1|A|U|1522
9OJM|1|A|A|1523
9OJM|1|A|A|1524
9OJM|1|A|C|1525
9OJM|1|A|U|1526
9OJM|1|A|A|1527
9OJM|1|A|A|1528

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 0

Small ribosomal subunit protein mS34

Chain V

Small ribosomal subunit protein mS27