HL_9P6Z_062

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9P6Z|1|L5|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P6Z_062 not in the Motif Atlas

Homologous match to HL_9H3G_055

Geometric discrepancy: 0.0932

The information below is about HL_9H3G_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9P6Z|1|L5|C|4193
9P6Z|1|L5|U|4194
9P6Z|1|L5|G|4195
9P6Z|1|L5|OMG|4196
9P6Z|1|L5|G|4197
9P6Z|1|L5|G|4198
9P6Z|1|L5|C|4199
9P6Z|1|L5|G|4200
9P6Z|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29

Chain Pt

Transfer RNA; tRNA