HL_9P7G_003

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7G_003 not in the Motif Atlas

Homologous match to HL_4WT8_217

Geometric discrepancy: 0.1799

The information below is about HL_4WT8_217

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9P7G|1|At|G|53
9P7G|1|At|U|54
9P7G|1|At|U|55
9P7G|1|At|C|56
9P7G|1|At|G|57
9P7G|1|At|A|58
9P7G|1|At|A|59
9P7G|1|At|A|60
9P7G|1|At|C|61

Current chains

Chain At

A site tRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Ribosomal protein uL16-like