HL_9P7H_061

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9P7H|1|L5|A|3876, 9P7H|1|L5|A|3877, 9P7H|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7H_061 not in the Motif Atlas

Homologous match to HL_9H3G_054

Geometric discrepancy: 0.0808

The information below is about HL_9H3G_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9P7H|1|L5|G|3873
9P7H|1|L5|G|3874
9P7H|1|L5|G|3875
9P7H|1|L5|A|3876
9P7H|1|L5|A|3877
9P7H|1|L5|C|3878
9P7H|1|L5|G|3879
9P7H|1|L5|G|3880
9P7H|1|L5|G|3881
9P7H|1|L5|C|3882

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32