HL_9P7W_091

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CCUAACACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7W_091 not in the Motif Atlas

Homologous match to HL_4V9Q_214

Geometric discrepancy: 0.1233

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9P7W|1|Pt|C|31
9P7W|1|Pt|C|32
9P7W|1|Pt|U|33
9P7W|1|Pt|A|34
9P7W|1|Pt|A|35
9P7W|1|Pt|C|36
9P7W|1|Pt|A|37
9P7W|1|Pt|C|38
9P7W|1|Pt|G|39

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

Small ribosomal subunit protein uS19

Chain SQ

Small ribosomal subunit protein uS9