HL_9P7Y_064

3D structure

PDB id

9P7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9P7Y|1|L5|A|3876, 9P7Y|1|L5|A|3877, 9P7Y|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P7Y_064 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.0494

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9P7Y|1|L5|G|3873
9P7Y|1|L5|G|3874
9P7Y|1|L5|G|3875
9P7Y|1|L5|A|3876
9P7Y|1|L5|A|3877
9P7Y|1|L5|C|3878
9P7Y|1|L5|G|3879
9P7Y|1|L5|G|3880
9P7Y|1|L5|G|3881
9P7Y|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32