HL_9P8C_018
3D structure
- PDB id
- 9P8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 9P8C|1|L5|C|1442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8C_018 not in the Motif Atlas
- Homologous match to HL_8GLP_020
- Geometric discrepancy: 0.454
- The information below is about HL_8GLP_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20751.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9P8C|1|L5|C|1436
9P8C|1|L5|C|1437
9P8C|1|L5|U|1438
9P8C|1|L5|C|1439
9P8C|1|L5|U|1440
9P8C|1|L5|C|1441
9P8C|1|L5|C|1442
9P8C|1|L5|A|1443
9P8C|1|L5|G|1444
9P8C|1|L5|U|1445
9P8C|1|L5|C|1446
9P8C|1|L5|C|1447
9P8C|1|L5|G|1448
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- Large ribosomal subunit protein eL29
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