HL_9P8C_078

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9P8C|1|L8|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P8C_078 not in the Motif Atlas

Homologous match to HL_8GLP_080

Geometric discrepancy: 0.5117

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9P8C|1|L8|C|107
9P8C|1|L8|A|108
9P8C|1|L8|C|109
9P8C|1|L8|U|110
9P8C|1|L8|U|111
9P8C|1|L8|G|112

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39