HL_9P8C_088

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9P8C|1|S2|C|450, 9P8C|1|S2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|S2|C|441
9P8C|1|S2|C|442
9P8C|1|S2|U|443
9P8C|1|S2|G|444
9P8C|1|S2|A|445
9P8C|1|S2|G|446
9P8C|1|S2|A|447
9P8C|1|S2|A|448
9P8C|1|S2|A|449
9P8C|1|S2|C|450
9P8C|1|S2|G|451
9P8C|1|S2|G|452

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24