HL_9P8I_063

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9P8I|1|L5|A|4214, 9P8I|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|U|4210
9P8I|1|L5|C|4211
9P8I|1|L5|A|4212
9P8I|1|L5|A|4213
9P8I|1|L5|A|4214
9P8I|1|L5|C|4215
9P8I|1|L5|G|4216
9P8I|1|L5|G|4217
9P8I|1|L5|U|4218
9P8I|1|L5|A|4219
9P8I|1|L5|6MZ|4220
9P8I|1|L5|C|4221
9P8I|1|L5|G|4222

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29