9P8I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9P8I_001 | 1/L5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9P8I_002 | 1/L5/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9P8I_003 | 1/L5/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.5 | |
| HL_9P8I_005 | 1/L5/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.6 | |
| HL_9P8I_006 | 1/L5/222:226 | No text annotation | homologous HL_8GLP_006 HL_75660.11 | |
| HL_9P8I_007 | 1/L5/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_9P8I_008 | 1/L5/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.5 | |
| HL_9P8I_009 | 1/L5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_9P8I_010 | 1/L5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.7 | |
| HL_9P8I_011 | 1/L5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9P8I_014 | 1/L5/1170:1191 | No text annotation | ||
| HL_9P8I_016 | 1/L5/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9P8I_017 | 1/L5/1364:1373 | No text annotation | homologous HL_8GLP_120 NA | |
| HL_9P8I_018 | 1/L5/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.7 | |
| HL_9P8I_022 | 1/L5/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9P8I_023 | 1/L5/1593:1602 | No text annotation | homologous HL_9AXU_018 HL_50204.4 | |
| HL_9P8I_024 | 1/L5/1627:1635 | No text annotation | homologous HL_8GLP_024 HL_28253.2 | |
| HL_9P8I_025 | 1/L5/1675:1680 | No text annotation | homologous HL_9AXU_020 HL_27530.4 | |
| HL_9P8I_027 | 1/L5/1816:1823 | No text annotation | homologous HL_8GLP_027 HL_63894.5 | |
| HL_9P8I_029 | 1/L5/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9P8I_035 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.8 | |
| HL_9P8I_036 | 1/L5/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9P8I_037 | 1/L5/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9P8I_038 | 1/L5/2469:2471 | No text annotation | homologous HL_8GLP_036 NA | |
| HL_9P8I_040 | 1/L5/2523:2532 | No text annotation | homologous HL_8GLP_038 HL_77449.4 | |
| HL_9P8I_042 | 1/L5/2578:2583 | No text annotation | homologous HL_8GLP_040 HL_34789.7 | |
| HL_9P8I_043 | 1/L5/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9P8I_044 | 1/L5/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_9P8I_046 | 1/L5/2738:2742 | No text annotation | homologous HL_9AXU_037 HL_90436.6 | |
| HL_9P8I_047 | 1/L5/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.5 | |
| HL_9P8I_048 | 1/L5/2810:2816 | No text annotation | homologous HL_9H3G_046 HL_34789.7 | |
| HL_9P8I_053 | 1/L5/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_9P8I_054 | 1/L5/3668:3674 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_9P8I_055 | 1/L5/3724:3729 | No text annotation | homologous HL_9AXU_044 HL_34789.7 | |
| HL_9P8I_057 | 1/L5/3796:3804 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9P8I_058 | 1/L5/3873:3882 | No text annotation | homologous HL_8GLP_055 HL_78372.4 | |
| HL_9P8I_062 | 1/L5/4193:4201 | LSU P loop | homologous HL_9AXU_050 HL_11974.5 | |
| HL_9P8I_063 | 1/L5/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_9P8I_064 | 1/L5/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9P8I_066 | 1/L5/4301:4309 | No text annotation | homologous HL_9PN5_056 HL_15296.4 | |
| HL_9P8I_067 | 1/L5/4321:4326 | No text annotation | homologous HL_8GLP_064 HL_34789.7 | |
| HL_9P8I_068 | 1/L5/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9P8I_071 | 1/L5/4497:4503 | No text annotation | homologous HL_9H3G_064 HL_02262.2 | |
| HL_9P8I_072 | 1/L5/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9P8I_073 | 1/L5/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9P8I_075 | 1/L5/4688:4702 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_9P8I_077 | 1/L5/4907:4914 | No text annotation | homologous HL_8GLP_074 HL_31089.4 | |
| HL_9P8I_078 | 1/L5/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_9P8I_080 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_9P8I_081 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_9P8I_082 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9P8I_083 | 1/L8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_9P8I_085 | 1/L8/107:112 | No text annotation | homologous HL_9AXU_073 HL_23875.2 | |
| HL_9P8I_090 | 1/S2/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_9P8I_098 | 1/S2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9P8I_108 | 1/S2/957:966 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9P8I_109 | 1/S2/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.7 | |
| HL_9P8I_110 | 1/S2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9P8I_112 | 1/S2/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9P8I_113 | 1/S2/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9P8I_114 | 1/S2/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_9P8I_117 | 1/S2/1366:1373 | No text annotation | homologous HL_9PN5_104 HL_63894.5 | |
| HL_9P8I_121 | 1/S2/1614:1625 | No text annotation | homologous HL_9PN5_108 HL_50951.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9P8I_004 | No text annotation | ||
| HL_9P8I_012 | No text annotation | ||
| HL_9P8I_013 | Mini UNCG | ||
| HL_9P8I_015 | No text annotation | ||
| HL_9P8I_019 | No text annotation | ||
| HL_9P8I_020 | No text annotation | ||
| HL_9P8I_021 | No text annotation | ||
| HL_9P8I_026 | No text annotation | ||
| HL_9P8I_028 | No text annotation | ||
| HL_9P8I_030 | No text annotation | ||
| HL_9P8I_031 | No text annotation | ||
| HL_9P8I_032 | No text annotation | ||
| HL_9P8I_033 | No text annotation | ||
| HL_9P8I_034 | No text annotation | ||
| HL_9P8I_039 | No text annotation | ||
| HL_9P8I_041 | No text annotation | ||
| HL_9P8I_045 | No text annotation | ||
| HL_9P8I_049 | No text annotation | ||
| HL_9P8I_050 | No text annotation | ||
| HL_9P8I_051 | No text annotation | ||
| HL_9P8I_052 | No text annotation | ||
| HL_9P8I_056 | No text annotation | ||
| HL_9P8I_059 | No text annotation | ||
| HL_9P8I_060 | No text annotation | ||
| HL_9P8I_061 | No text annotation | ||
| HL_9P8I_065 | No text annotation | ||
| HL_9P8I_069 | No text annotation | ||
| HL_9P8I_070 | No text annotation | ||
| HL_9P8I_074 | No text annotation | ||
| HL_9P8I_076 | No text annotation | ||
| HL_9P8I_079 | No text annotation | ||
| HL_9P8I_084 | No text annotation | ||
| HL_9P8I_086 | No text annotation | ||
| HL_9P8I_087 | No text annotation | ||
| HL_9P8I_088 | tRNA anticodon loop | ||
| HL_9P8I_089 | T-loop with 2 stacked bulged bases | ||
| HL_9P8I_091 | No text annotation | ||
| HL_9P8I_092 | No text annotation | ||
| HL_9P8I_093 | No text annotation | ||
| HL_9P8I_094 | No text annotation | ||
| HL_9P8I_095 | No text annotation | ||
| HL_9P8I_096 | No text annotation | ||
| HL_9P8I_097 | No text annotation | ||
| HL_9P8I_099 | No text annotation | ||
| HL_9P8I_100 | No text annotation | ||
| HL_9P8I_101 | No text annotation | ||
| HL_9P8I_102 | No text annotation | ||
| HL_9P8I_103 | No text annotation | ||
| HL_9P8I_104 | No text annotation | ||
| HL_9P8I_105 | No text annotation | ||
| HL_9P8I_106 | No text annotation | ||
| HL_9P8I_107 | No text annotation | ||
| HL_9P8I_111 | No text annotation | ||
| HL_9P8I_115 | No text annotation | ||
| HL_9P8I_116 | No text annotation | ||
| HL_9P8I_118 | No text annotation | ||
| HL_9P8I_119 | No text annotation | ||
| HL_9P8I_120 | No text annotation | ||
| HL_9P8I_122 | No text annotation | ||
| HL_9P8I_123 | No text annotation | ||
| HL_9P8I_124 | No text annotation | ||
| HL_9P8I_125 | No text annotation | ||
| HL_9P8I_126 | tRNA anticodon loop | ||
| HL_9P8I_127 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9P8I_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_9P8I_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_9P8I_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_9PN5_003 IL_15011.6 | |
| IL_9P8I_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_9P8I_006 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.6 | |
| IL_9P8I_007 | 1/L5/118:122, 1/L5/147:153 | Kink-turn with embedded cWW pair | homologous IL_8GLP_287 IL_65996.1 | |
| IL_9P8I_013 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.6 | |
| IL_9P8I_014 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_9P8I_015 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_9P8I_016 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_9P8I_018 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_9P8I_019 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9P8I_032 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | homologous IL_8GLP_034 IL_28408.5 | |
| IL_9P8I_033 | 1/L5/723:724, 1/L5/942:945 | No text annotation | geometric IL_8GLP_035 IL_09092.2 | |
| IL_9P8I_034 | 1/L5/727:731, 1/L5/938:939 | No text annotation | geometric IL_8GLP_036 IL_75501.2 | |
| IL_9P8I_049 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9P8I_050 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | homologous IL_8GLP_288 NA | |
| IL_9P8I_054 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9P8I_056 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.5 | |
| IL_9P8I_057 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.6 | |
| IL_9P8I_058 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | homologous IL_8GLP_055 IL_05642.6 | |
| IL_9P8I_059 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.7 | |
| IL_9P8I_060 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8GLP_290 IL_73855.4 | |
| IL_9P8I_061 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8GLP_057 IL_14190.5 | |
| IL_9P8I_064 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9P8I_065 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8GLP_061 IL_97561.8 | |
| IL_9P8I_066 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.4 | |
| IL_9P8I_067 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9P8I_068 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9P8I_070 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_9AXU_036 IL_28408.5 | |
| IL_9P8I_071 | 1/L5/1732:1738, 1/L5/1790:1797 | No text annotation | homologous IL_8GLP_067 NA | |
| IL_9P8I_072 | 1/L5/1739:1744, 1/L5/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.4 | |
| IL_9P8I_073 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9P8I_074 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9H3G_048 IL_01003.7 | |
| IL_9P8I_076 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.5 | |
| IL_9P8I_077 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9P8I_079 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.4 | |
| IL_9P8I_080 | 1/L5/1911:1918, 1/L5/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.4 | |
| IL_9P8I_081 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.5 | |
| IL_9P8I_082 | 1/L5/1920:1922, 1/L5/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.6 | |
| IL_9P8I_083 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_9P8I_084 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.4 | |
| IL_9P8I_085 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9P8I_088 | 1/L5/2001:2005, 1/L5/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.5 | |
| IL_9P8I_090 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.2 | |
| IL_9P8I_091 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_9P8I_092 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_9P8I_093 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_9P8I_094 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.4 | |
| IL_9P8I_095 | 1/L5/2415:2419, 1/L5/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.4 | |
| IL_9P8I_096 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_9AXU_060 IL_08938.4 | |
| IL_9P8I_099 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | ||
| IL_9P8I_100 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_9P8I_102 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged A | homologous IL_8GLP_097 IL_14190.5 | |
| IL_9P8I_103 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.6 | |
| IL_9P8I_104 | 1/L5/2646:2648, 1/L5/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_9P8I_105 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_9P8I_106 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_9P8I_108 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_9AXU_070 IL_89862.4 | |
| IL_9P8I_109 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_9H3G_084 IL_10432.4 | |
| IL_9P8I_110 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.5 | |
| IL_9P8I_111 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.4 | |
| IL_9P8I_112 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.4 | |
| IL_9P8I_113 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.4 | |
| IL_9P8I_115 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_9PN5_079 IL_18824.4 | |
| IL_9P8I_118 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9P8I_119 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_9P8I_120 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8GLP_116 IL_55206.4 | |
| IL_9P8I_121 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | homologous IL_8GLP_117 IL_71421.6 | |
| IL_9P8I_125 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_9H3G_097 IL_65359.4 | |
| IL_9P8I_126 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_9AXU_083 IL_24886.5 | |
| IL_9P8I_127 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.4 | |
| IL_9P8I_128 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8GLP_127 IL_75527.5 | |
| IL_9P8I_129 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.4 | |
| IL_9P8I_130 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_9AXU_087 IL_97561.8 | |
| IL_9P8I_131 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_8GLP_131 IL_37129.1 | |
| IL_9P8I_132 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9P8I_133 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_9P8I_134 | 1/L5/4191:4192, 1/L5/4202:4204 | AG tHS outside loop | homologous IL_9PN5_094 IL_14190.5 | |
| IL_9P8I_135 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9P8I_137 | 1/L5/4295:4297, 1/L5/4314:4315 | Single stack bend | geometric IL_8B0X_089 IL_15011.6 | |
| IL_9P8I_138 | 1/L5/4297:4298, 1/L5/4312:4314 | Single stack bend | geometric IL_4LFB_041 IL_15011.6 | |
| IL_9P8I_140 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_9H3G_116 IL_48076.11 | |
| IL_9P8I_141 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.7 | |
| IL_9P8I_142 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_9H3G_118 IL_46637.5 | |
| IL_9P8I_144 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8GLP_145 IL_87767.5 | |
| IL_9P8I_145 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | homologous IL_8GLP_146 IL_46637.5 | |
| IL_9P8I_146 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9P8I_147 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.5 | |
| IL_9P8I_148 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9P8I_149 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9P8I_150 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9P8I_151 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.7 | |
| IL_9P8I_152 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.5 | |
| IL_9P8I_153 | 1/L5/4580:4582, 1/L5/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_9P8I_154 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9P8I_156 | 1/L5/4596:4603, 1/L5/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9P8I_157 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_9P8I_160 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_9P8I_161 | 1/L5/4680:4685, 1/L5/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9P8I_165 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | homologous IL_8GLP_168 NA | |
| IL_9P8I_170 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9AXU_117 IL_71194.5 | |
| IL_9P8I_173 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_9P8I_175 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged U | homologous IL_9PN5_130 IL_97561.8 | |
| IL_9P8I_176 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared; A in syn | geometric IL_8OI5_132 IL_58355.5 | |
| IL_9P8I_177 | 1/L7/15:16, 1/L7/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.6 | |
| IL_9P8I_178 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9P8I_180 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9P8I_182 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_9P8I_183 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_9P8I_184 | 1/L8/64:66, 1/L8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 | |
| IL_9P8I_186 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_8OI5_023 IL_01003.7 | |
| IL_9P8I_204 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9P8I_205 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_9PN5_160 IL_01372.4 | |
| IL_9P8I_217 | 1/S2/599:606, 1/S2/636:637 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9P8I_220 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9P8I_221 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_9PN5_174 IL_20847.4 | |
| IL_9P8I_222 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9P8I_223 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9P8I_224 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_9H3G_192 IL_73108.5 | |
| IL_9P8I_226 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9P8I_230 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.8 | |
| IL_9P8I_231 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_9P8I_232 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9P8I_233 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9P8I_234 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9P8I_236 | 1/S2/1047:1051, 1/S2/1067:1071 | No text annotation | homologous IL_9H3G_204 IL_05821.4 | |
| IL_9P8I_237 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9P8I_238 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9P8I_239 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_9P8I_241 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9P8I_242 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9P8I_243 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9P8I_244 | 1/S2/1214:1217, 1/S2/1681:1685 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_9P8I_245 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9PN5_198 IL_01003.7 | |
| IL_9P8I_248 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation | ||
| IL_9P8I_249 | 1/S2/1281:1290, 1/S2/1309:1316 | No text annotation | ||
| IL_9P8I_257 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9P8I_268 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9P8I_269 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_9P8I_270 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9P8I_271 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9P8I_272 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9P8I_273 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9P8I_275 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9P8I_276 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9P8I_277 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9P8I_001 | Single bulged C | ||
| IL_9P8I_008 | Single bulged C | ||
| IL_9P8I_009 | No text annotation | ||
| IL_9P8I_010 | Single stack bend | ||
| IL_9P8I_011 | Single stack bend | ||
| IL_9P8I_012 | No text annotation | ||
| IL_9P8I_017 | No text annotation | ||
| IL_9P8I_020 | Single bulged C | ||
| IL_9P8I_021 | Single bulged C | ||
| IL_9P8I_022 | Isolated non-canonical cWW pair | ||
| IL_9P8I_023 | No text annotation | ||
| IL_9P8I_024 | No text annotation | ||
| IL_9P8I_025 | No text annotation | ||
| IL_9P8I_026 | Single stack bend | ||
| IL_9P8I_027 | Minor groove platform | ||
| IL_9P8I_028 | Single stack bend | ||
| IL_9P8I_029 | Multiple bulged bases | ||
| IL_9P8I_030 | Single bulged A | ||
| IL_9P8I_031 | No text annotation | ||
| IL_9P8I_035 | No text annotation | ||
| IL_9P8I_036 | No text annotation | ||
| IL_9P8I_037 | No text annotation | ||
| IL_9P8I_038 | No text annotation | ||
| IL_9P8I_039 | Single bulged A | ||
| IL_9P8I_040 | No text annotation | ||
| IL_9P8I_041 | Single stack bend | ||
| IL_9P8I_042 | Isolated cWH basepair | ||
| IL_9P8I_043 | Single bulged C | ||
| IL_9P8I_044 | No text annotation | ||
| IL_9P8I_045 | Isolated non-canonical cWW pair | ||
| IL_9P8I_046 | Single stack bend | ||
| IL_9P8I_047 | Multiple bulged bases | ||
| IL_9P8I_048 | Single bulged G | ||
| IL_9P8I_051 | No text annotation | ||
| IL_9P8I_052 | Single stack bend | ||
| IL_9P8I_053 | Single stack bend | ||
| IL_9P8I_055 | Double sheared | ||
| IL_9P8I_062 | Single bulged G | ||
| IL_9P8I_063 | No text annotation | ||
| IL_9P8I_069 | No text annotation | ||
| IL_9P8I_075 | No text annotation | ||
| IL_9P8I_078 | No text annotation | ||
| IL_9P8I_086 | Kink-turn | ||
| IL_9P8I_087 | No text annotation | ||
| IL_9P8I_089 | Single bulged C | ||
| IL_9P8I_097 | Minor groove platform | ||
| IL_9P8I_098 | Tandem non-canonical cWW pairs | ||
| IL_9P8I_101 | No text annotation | ||
| IL_9P8I_107 | Single bulged G | ||
| IL_9P8I_114 | Isolated non-canonical cWW pair | ||
| IL_9P8I_116 | No text annotation | ||
| IL_9P8I_117 | No text annotation | ||
| IL_9P8I_122 | Single stack bend | ||
| IL_9P8I_123 | No text annotation | ||
| IL_9P8I_124 | No text annotation | ||
| IL_9P8I_136 | Single bulged A | ||
| IL_9P8I_139 | No text annotation | ||
| IL_9P8I_143 | No text annotation | ||
| IL_9P8I_155 | Isolated non-canonical cWW pair | ||
| IL_9P8I_158 | No text annotation | ||
| IL_9P8I_159 | Isolated cWH basepair | ||
| IL_9P8I_162 | No text annotation | ||
| IL_9P8I_163 | Tandem non-canonical cWW pairs | ||
| IL_9P8I_164 | No text annotation | ||
| IL_9P8I_166 | Isolated non-canonical cWW pair | ||
| IL_9P8I_167 | No text annotation | ||
| IL_9P8I_168 | No text annotation | ||
| IL_9P8I_169 | Single bulged C | ||
| IL_9P8I_171 | Isolated non-canonical cWW pair | ||
| IL_9P8I_172 | Single bulged C | ||
| IL_9P8I_174 | No text annotation | ||
| IL_9P8I_179 | Major groove minor groove platform; mini C-loop | ||
| IL_9P8I_181 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9P8I_185 | No text annotation | ||
| IL_9P8I_187 | Isolated non-canonical cWW pair | ||
| IL_9P8I_188 | Double sheared | ||
| IL_9P8I_189 | No text annotation | ||
| IL_9P8I_190 | Minor groove platform | ||
| IL_9P8I_191 | No text annotation | ||
| IL_9P8I_192 | No text annotation | ||
| IL_9P8I_193 | No text annotation | ||
| IL_9P8I_194 | No text annotation | ||
| IL_9P8I_195 | Minor groove platform | ||
| IL_9P8I_196 | No text annotation | ||
| IL_9P8I_197 | No text annotation | ||
| IL_9P8I_198 | No text annotation | ||
| IL_9P8I_199 | No text annotation | ||
| IL_9P8I_200 | No text annotation | ||
| IL_9P8I_201 | No text annotation | ||
| IL_9P8I_202 | Single bulged A | ||
| IL_9P8I_203 | No text annotation | ||
| IL_9P8I_206 | No text annotation | ||
| IL_9P8I_207 | Isolated cWH basepair | ||
| IL_9P8I_208 | Isolated non-canonical cWW pair | ||
| IL_9P8I_209 | Single bulged U | ||
| IL_9P8I_210 | No text annotation | ||
| IL_9P8I_211 | Single bulged G | ||
| IL_9P8I_212 | Isolated non-canonical cWW pair | ||
| IL_9P8I_213 | No text annotation | ||
| IL_9P8I_214 | No text annotation | ||
| IL_9P8I_215 | No text annotation | ||
| IL_9P8I_216 | Tandem non-canonical cWW pairs | ||
| IL_9P8I_218 | Single bulged U | ||
| IL_9P8I_219 | Kink-turn related | ||
| IL_9P8I_225 | Isolated non-canonical cWW pair | ||
| IL_9P8I_227 | Isolated non-canonical cWW pair | ||
| IL_9P8I_228 | No text annotation | ||
| IL_9P8I_229 | Major groove platform; stack outside cWW | ||
| IL_9P8I_235 | No text annotation | ||
| IL_9P8I_240 | Minor groove platform | ||
| IL_9P8I_246 | Minor groove platform | ||
| IL_9P8I_247 | Isolated non-canonical cWW pair | ||
| IL_9P8I_250 | No text annotation | ||
| IL_9P8I_251 | No text annotation | ||
| IL_9P8I_252 | Single bulged U | ||
| IL_9P8I_253 | No text annotation | ||
| IL_9P8I_254 | No text annotation | ||
| IL_9P8I_255 | No text annotation | ||
| IL_9P8I_256 | Single bulged A | ||
| IL_9P8I_258 | Minor groove platform | ||
| IL_9P8I_259 | No text annotation | ||
| IL_9P8I_260 | No text annotation | ||
| IL_9P8I_261 | No text annotation | ||
| IL_9P8I_262 | Single bulged G | ||
| IL_9P8I_263 | Isolated non-canonical cWW pair | ||
| IL_9P8I_264 | No text annotation | ||
| IL_9P8I_265 | No text annotation | ||
| IL_9P8I_266 | No text annotation | ||
| IL_9P8I_267 | No text annotation | ||
| IL_9P8I_274 | Single bulged U | ||
| IL_9P8I_278 | No text annotation | ||
| IL_9P8I_279 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9P8I_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9P8I_002 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.4 | |
| J3_9P8I_003 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.4 | |
| J3_9P8I_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_9P8I_006 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9P8I_007 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_9AXU_009 J3_46658.4 | |
| J3_9P8I_008 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9P8I_009 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9P8I_011 | 1/L5/2087:2110, 1/L5/2252:2257, 1/L5/2261:2270 | No text annotation | ||
| J3_9P8I_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8GLP_004 J3_05025.4 | |
| J3_9P8I_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8GLP_005 J3_76012.4 | |
| J3_9P8I_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_9P8I_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_9P8I_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_9P8I_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_9P8I_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_9H3G_020 J3_08594.4 | |
| J3_9P8I_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9P8I_020 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_9P8I_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.4 | |
| J3_9P8I_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9P8I_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | homologous J3_8GLP_036 NA | |
| J3_9P8I_026 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_9P8I_027 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J3_9P8I_028 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | homologous J3_9H3G_028 J3_58657.4 | |
| J3_9P8I_029 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_9P8I_030 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_9P8I_031 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_9P8I_032 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9P8I_033 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_9P8I_034 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_9P8I_035 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.4 | |
| J3_9P8I_036 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9P8I_038 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_9PN5_039 NA | |
| J3_9P8I_040 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9P8I_041 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J4_9P8I_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_9P8I_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | homologous J4_8GLP_002 NA | |
| J4_9P8I_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9P8I_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9P8I_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_9PN5_004 J4_17758.2 | |
| J4_9P8I_006 | 1/L5/2451:2456, 1/L5/2465:2469, 1/L5/2471:2476, 1/L5/2501:2508 | No text annotation | homologous J4_8GLP_007 NA | |
| J4_9P8I_007 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9P8I_008 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9P8I_009 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9P8I_010 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_9P8I_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9P8I_012 | 1/Pt/7:10, 1/Pt/25:27, 1/Pt/43:49, 1/Pt/65:66 | tRNA junction | homologous J4_3WQY_001 J4_95067.3 | |
| J4_9P8I_013 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9P8I_014 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J4_9P8I_015 | 1/S2/685:747, 1/S2/795:800, 1/S2/865:874, 1/S2/912:917 | No text annotation | ||
| J5_9P8I_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.4 | |
| J5_9P8I_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8GLP_002 J5_08384.4 | |
| J5_9P8I_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_9P8I_004 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_9P8I_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_9AXU_007 J5_96125.4 | |
| J6_9P8I_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9P8I_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9P8I_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9P8I_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9P8I_005 | No text annotation | ||
| J3_9P8I_010 | No text annotation | ||
| J3_9P8I_022 | No text annotation | ||
| J3_9P8I_025 | No text annotation | ||
| J3_9P8I_037 | No text annotation | ||
| J3_9P8I_039 | No text annotation | ||
| J4_9P8I_016 | tRNA junction | ||
| J5_9P8I_006 | No text annotation | ||
| J5_9P8I_007 | No text annotation | ||
| J5_9P8I_008 | No text annotation | ||
| J5_9P8I_009 | No text annotation |
Coloring options: