HL_9P9K_056

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9P9K|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P9K_056 not in the Motif Atlas

Homologous match to HL_9H3G_052

Geometric discrepancy: 0.1426

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.4

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9P9K|1|L5|G|3757
9P9K|1|L5|U|3758
9P9K|1|L5|A|3759
9P9K|1|L5|A|3760
9P9K|1|L5|C|3761
9P9K|1|L5|U|3762
9P9K|1|L5|A|3763
9P9K|1|L5|U|3764
9P9K|1|L5|G|3765
9P9K|1|L5|A|3766
9P9K|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains