HL_9PBE_014

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

9PBE|1|L5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|U|1317
9PBE|1|L5|C|1318
9PBE|1|L5|U|1319
9PBE|1|L5|U|1320
9PBE|1|L5|G|1321
9PBE|1|L5|1MA|1322
9PBE|1|L5|A2M|1323
9PBE|1|L5|A|1324
9PBE|1|L5|C|1325
9PBE|1|L5|A2M|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32