HL_9PBE_025

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9PBE|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PBE_025 not in the Motif Atlas

Homologous match to HL_9PN5_023

Geometric discrepancy: 0.4131

The information below is about HL_9PN5_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9PBE|1|L5|C|1816
9PBE|1|L5|U|1817
9PBE|1|L5|G|1818
9PBE|1|L5|G|1819
9PBE|1|L5|C|1820
9PBE|1|L5|G|1821
9PBE|1|L5|U|1822
9PBE|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29