HL_9PBE_051

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9PBE|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|3757
9PBE|1|L5|U|3758
9PBE|1|L5|A|3759
9PBE|1|L5|A|3760
9PBE|1|L5|C|3761
9PBE|1|L5|U|3762
9PBE|1|L5|A|3763
9PBE|1|L5|U|3764
9PBE|1|L5|G|3765
9PBE|1|L5|A|3766
9PBE|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA