HL_9PBE_114

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9PBE|1|S2|U|1621, 9PBE|1|S2|U|1622, 9PBE|1|S2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|A|1614
9PBE|1|S2|U|1615
9PBE|1|S2|U|1616
9PBE|1|S2|G|1617
9PBE|1|S2|C|1618
9PBE|1|S2|A|1619
9PBE|1|S2|A|1620
9PBE|1|S2|U|1621
9PBE|1|S2|U|1622
9PBE|1|S2|A|1623
9PBE|1|S2|U|1624
9PBE|1|S2|U|1625

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain Sd

40S ribosomal protein S29