HL_9PGF_047

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UUGUAAAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGF_047 not in the Motif Atlas

Geometric match to HL_8B0X_014

Geometric discrepancy: 0.2038

The information below is about HL_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9PGF|1|AA|U|989
9PGF|1|AA|U|990
9PGF|1|AA|G|991
9PGF|1|AA|U|992
9PGF|1|AA|A|993
9PGF|1|AA|A|994
9PGF|1|AA|A|995
9PGF|1|AA|A|996
9PGF|1|AA|A|997
9PGF|1|AA|A|998

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

Small ribosomal subunit protein bS21m

Chain Az

mRNA