HL_9PGF_053

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9PGF|1|AA|A|1283, 9PGF|1|AA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGF_053 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.3825

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9PGF|1|AA|U|1281
9PGF|1|AA|G|1282
9PGF|1|AA|A|1283
9PGF|1|AA|U|1284
9PGF|1|AA|G|1285
9PGF|1|AA|A|1286
9PGF|1|AA|A|1287

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AB

28S ribosomal protein S2, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial