HL_9PGI_024
3D structure
- PDB id
- 9PGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CUUAA(1MA)UAG
- Length
- 9 nucleotides
- Bulged bases
- 9PGI|1|A|U|2618
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PGI_024 not in the Motif Atlas
- Homologous match to HL_7A0S_048
- Geometric discrepancy: 0.2177
- The information below is about HL_7A0S_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61418.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9PGI|1|A|C|2612
9PGI|1|A|U|2613
9PGI|1|A|U|2614
9PGI|1|A|A|2615
9PGI|1|A|A|2616
9PGI|1|A|1MA|2617
9PGI|1|A|U|2618
9PGI|1|A|A|2619
9PGI|1|A|G|2620
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 39S ribosomal protein L14, mitochondrial
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