HL_9PGI_061

3D structure

PDB id

9PGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UAAAUAA

Length

7 nucleotides

Bulged bases

9PGI|1|Ax|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGI_061 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3579

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9PGI|1|Ax|U|13
9PGI|1|Ax|A|14
9PGI|1|Ax|A|15
9PGI|1|Ax|A|16
9PGI|1|Ax|U|17
9PGI|1|Ax|A|18
9PGI|1|Ax|A|19

Current chains

Chain Ax

P/P-tRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1