HL_9PGM_024

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

9PGM|1|A|U|2618

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGM_024 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2252

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PGM|1|A|C|2612
9PGM|1|A|U|2613
9PGM|1|A|U|2614
9PGM|1|A|A|2615
9PGM|1|A|A|2616
9PGM|1|A|1MA|2617
9PGM|1|A|U|2618
9PGM|1|A|A|2619
9PGM|1|A|G|2620

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain L

39S ribosomal protein L14, mitochondrial