HL_9PGM_031

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGM_031 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2282

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9PGM|1|A|A|2958
9PGM|1|A|G|2959
9PGM|1|A|U|2960
9PGM|1|A|C|2961
9PGM|1|A|C|2962
9PGM|1|A|A|2963
9PGM|1|A|U|2964
9PGM|1|A|A|2965
9PGM|1|A|U|2966

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial