HL_9PGM_033

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGM_033 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.25

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9PGM|1|A|U|3038
9PGM|1|A|OMU|3039
9PGM|1|A|OMG|3040
9PGM|1|A|U|3041
9PGM|1|A|U|3042
9PGM|1|A|C|3043
9PGM|1|A|A|3044

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains