HL_9PIH_044

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9PIH|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_044 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1009

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PIH|1|a|G|410
9PIH|1|a|G|411
9PIH|1|a|A|412
9PIH|1|a|C|413
9PIH|1|a|C|414
9PIH|1|a|A|415
9PIH|1|a|U|416
9PIH|1|a|C|417

Current chains

Chain a

23S ribosomal RNA

Nearby chains