HL_9PIH_056

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_056 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.1846

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9PIH|1|a|C|885
9PIH|1|a|A|886
9PIH|1|a|U|887
9PIH|1|a|C|888
9PIH|1|a|C|889
9PIH|1|a|C|890
9PIH|1|a|G|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13