HL_9PII_037

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9PII|1|a|A|196, 9PII|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_037 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0909

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9PII|1|a|G|194
9PII|1|a|A|195
9PII|1|a|A|196
9PII|1|a|A|197
9PII|1|a|C|198
9PII|1|a|A|199
9PII|1|a|U|200
9PII|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

50S ribosomal protein L28