HL_9PII_072

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_072 not in the Motif Atlas

Homologous match to HL_7A0S_044

Geometric discrepancy: 0.171

The information below is about HL_7A0S_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9PII|1|a|C|1752
9PII|1|a|G|1753
9PII|1|a|A|1754
9PII|1|a|A|1755
9PII|1|a|G|1756

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL19