HL_9PII_088

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9PII|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_088 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1382

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9PII|1|a|U|2528
9PII|1|a|G|2529
9PII|1|a|A|2530
9PII|1|a|A|2531
9PII|1|a|G|2532
9PII|1|a|U|2533
9PII|1|a|A|2534
9PII|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6