HL_9PIJ_027

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9PIJ|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIJ_027 not in the Motif Atlas

Geometric match to HL_2HW8_001

Geometric discrepancy: 0.0897

The information below is about HL_2HW8_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9PIJ|1|A|C|1449
9PIJ|1|A|U|1450
9PIJ|1|A|U|1451
9PIJ|1|A|C|1452
9PIJ|1|A|G|1453
9PIJ|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains