HL_9PJ7_001
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 9PJ7|1|A|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ7_001 not in the Motif Atlas
- Homologous match to HL_6CZR_072
- Geometric discrepancy: 0.132
- The information below is about HL_6CZR_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ7|1|A|U|16
9PJ7|1|A|U|17
9PJ7|1|A|U|18
9PJ7|1|A|G|19
9PJ7|1|A|A|20
9PJ7|1|A|U|21
9PJ7|1|A|C|22
9PJ7|1|A|C|23
9PJ7|1|A|U|24
9PJ7|1|A|G|25
9PJ7|1|A|G|26
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain L
- 30S ribosomal protein S12
Coloring options: