9PJ7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9PJ7_001 | 1/A/16:26 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9PJ7_002 | 1/A/159:164 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9PJ7_003 | 1/A/194:199 | No text annotation | ||
| HL_9PJ7_004 | 1/A/214:221 | No text annotation | geometric HL_9E6Q_025 HL_46211.1 | |
| HL_9PJ7_005 | 1/A/261:269 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9PJ7_006 | 1/A/298:303 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9PJ7_007 | 1/A/322:335 | No text annotation | ||
| HL_9PJ7_008 | 1/A/344:349 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9PJ7_009 | 1/A/381:386 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9PJ7_010 | 1/A/421:426 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9PJ7_011 | 1/A/456:461 | GNRA | homologous HL_6CZR_083 NA | |
| HL_9PJ7_012 | 1/A/504:509 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9PJ7_013 | 1/A/599:605 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_9PJ7_014 | 1/A/671:680 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9PJ7_015 | 1/A/708:713 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9PJ7_016 | 1/A/768:778 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9PJ7_018 | 1/A/846:851 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9PJ7_019 | 1/A/881:886 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9PJ7_020 | 1/A/947:956 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_9PJ7_021 | 1/A/997:1002 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_9PJ7_022 | 1/A/1061:1066 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9PJ7_023 | 1/A/1074:1081 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_9PJ7_024 | 1/A/1119:1126 | No text annotation | ||
| HL_9PJ7_025 | 1/A/1151:1157 | GNRA | homologous HL_6CZR_098 NA | |
| HL_9PJ7_026 | 1/A/1251:1256 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_9PJ7_027 | 1/A/1300:1309 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_9PJ7_028 | 1/A/1342:1353 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_9PJ7_029 | 1/A/1435:1442 | No text annotation | ||
| HL_9PJ7_030 | 1/A/1502:1507 | GNRA | homologous HL_6CZR_103 NA | |
| HL_9PJ7_031 | 1/C/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20490.1 | |
| HL_9PJ7_032 | 1/C/31:39 | No text annotation | homologous HL_5J8B_109 HL_81376.4 | |
| HL_9PJ7_033 | 1/C/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_33597.5 | |
| HL_9PJ7_034 | 1/a/58:67 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.2 | |
| HL_9PJ7_035 | 1/a/86:95 | No text annotation | ||
| HL_9PJ7_036 | 1/a/122:127 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_9PJ7_037 | 1/a/141:148 | GNRA with tandem sheared | geometric HL_5AOX_001 HL_98423.4 | |
| HL_9PJ7_038 | 1/a/164:174 | No text annotation | ||
| HL_9PJ7_039 | 1/a/201:208 | No text annotation | homologous HL_7A0S_006 HL_48677.2 | |
| HL_9PJ7_040 | 1/a/232:237 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_9PJ7_041 | 1/a/253:259 | No text annotation | homologous HL_7A0S_008 HL_76371.3 | |
| HL_9PJ7_043 | 1/a/390:397 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_9PJ7_044 | 1/a/404:408 | No text annotation | geometric HL_9H3G_010 HL_75660.9 | |
| HL_9PJ7_045 | 1/a/412:420 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.5 | |
| HL_9PJ7_046 | 1/a/471:481 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9PJ7_047 | 1/a/499:506 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9PJ7_048 | 1/a/551:556 | GNRA | homologous HL_7A0S_015 HL_34789.5 | |
| HL_9PJ7_049 | 1/a/576:581 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_9PJ7_050 | 1/a/629:635 | No text annotation | geometric HL_9AXU_012 HL_79773.1 | |
| HL_9PJ7_051 | 1/a/649:658 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.5 | |
| HL_9PJ7_052 | 1/a/696:702 | No text annotation | ||
| HL_9PJ7_053 | 1/a/715:720 | GNRA | homologous HL_7A0S_020 HL_34789.5 | |
| HL_9PJ7_054 | 1/a/727:733 | GNRA | geometric HL_9DFE_019 HL_34789.5 | |
| HL_9PJ7_055 | 1/a/797:804 | GNRA with tandem sheared | geometric HL_9DFE_020 HL_98423.4 | |
| HL_9PJ7_056 | 1/a/829:838 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_9PJ7_057 | 1/a/864:870 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_9PJ7_058 | 1/a/911:916 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_9PJ7_060 | 1/a/1037:1046 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.3 | |
| HL_9PJ7_061 | 1/a/1061:1068 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_9PJ7_064 | 1/a/1252:1258 | No text annotation | ||
| HL_9PJ7_065 | 1/a/1298:1303 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_9PJ7_066 | 1/a/1357:1365 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.5 | |
| HL_9PJ7_067 | 1/a/1400:1406 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_9PJ7_068 | 1/a/1439:1444 | GNRA variation | homologous HL_7A0S_034 HL_34789.5 | |
| HL_9PJ7_069 | 1/a/1465:1474 | No text annotation | homologous HL_7A0S_035 HL_77449.2 | |
| HL_9PJ7_070 | 1/a/1631:1642 | No text annotation | ||
| HL_9PJ7_071 | 1/a/1672:1678 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9PJ7_073 | 1/a/1748:1751 | Mini UNCG | homologous HL_7A0S_039 HL_90436.4 | |
| HL_9PJ7_074 | 1/a/1796:1803 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_9PJ7_075 | 1/a/1814:1820 | No text annotation | geometric HL_8B0X_069 HL_34789.5 | |
| HL_9PJ7_076 | 1/a/1875:1880 | UNCG | homologous HL_7A0S_042 HL_61337.5 | |
| HL_9PJ7_077 | 1/a/1909:1916 | No text annotation | geometric HL_6N5P_002 HL_64374.2 | |
| HL_9PJ7_078 | 1/a/1935:1939 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9PJ7_079 | 1/a/1960:1970 | No text annotation | geometric HL_8B0X_073 HL_87681.2 | |
| HL_9PJ7_080 | 1/a/1989:1994 | GNRA | homologous HL_7A0S_046 HL_93535.3 | |
| HL_9PJ7_081 | 1/a/2051:2056 | GNRA | homologous HL_7A0S_047 HL_34789.5 | |
| HL_9PJ7_082 | 1/a/2093:2103 | No text annotation | geometric HL_9H3G_052 HL_82185.2 | |
| HL_9PJ7_083 | 1/a/2132:2140 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9PJ7_084 | 1/a/2210:2219 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_9PJ7_085 | 1/a/2391:2397 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_9PJ7_086 | 1/a/2430:2438 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_9PJ7_087 | 1/a/2446:2458 | No text annotation | homologous HL_7A0S_053 HL_02042.2 | |
| HL_9PJ7_088 | 1/a/2486:2494 | No text annotation | geometric HL_8B0X_101 HL_02452.2 | |
| HL_9PJ7_089 | 1/a/2506:2513 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.3 | |
| HL_9PJ7_090 | 1/a/2538:2543 | No text annotation | geometric HL_8B0X_084 HL_34789.5 | |
| HL_9PJ7_091 | 1/a/2556:2561 | GNRA | homologous HL_7A0S_057 HL_34789.5 | |
| HL_9PJ7_092 | 1/a/2586:2595 | No text annotation | ||
| HL_9PJ7_093 | 1/a/2653:2661 | No text annotation | homologous HL_7A0S_059 HL_52011.2 | |
| HL_9PJ7_094 | 1/a/2710:2717 | No text annotation | ||
| HL_9PJ7_095 | 1/a/2733:2739 | LSU A loop | homologous HL_7A0S_061 HL_48677.2 | |
| HL_9PJ7_096 | 1/a/2776:2781 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_9PJ7_097 | 1/a/2840:2845 | GNRA | homologous HL_7A0S_063 HL_34789.5 | |
| HL_9PJ7_098 | 1/a/2883:2888 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_9PJ7_099 | 1/a/2927:2941 | No text annotation | homologous HL_7A0S_065 HL_53269.3 | |
| HL_9PJ7_100 | 1/a/2976:2983 | No text annotation | ||
| HL_9PJ7_101 | 1/a/2999:3007 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_9PJ7_102 | 1/a/3036:3041 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_9PJ7_103 | 1/b/34:48 | No text annotation | geometric HL_5NS3_003 HL_97756.4 | |
| HL_9PJ7_104 | 1/b/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.3 | |
| HL_9PJ7_105 | 1/b/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9PJ7_017 | No text annotation | ||
| HL_9PJ7_042 | No text annotation | ||
| HL_9PJ7_059 | No text annotation | ||
| HL_9PJ7_062 | No text annotation | ||
| HL_9PJ7_063 | GNRA with tandem sheared | ||
| HL_9PJ7_072 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9PJ7_001 | 1/A/34:36, 1/A/534:535 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9PJ7_002 | 1/A/48:49, 1/A/398:400 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9PJ7_003 | 1/A/51:56, 1/A/361:363 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_9PJ7_004 | 1/A/58:60, 1/A/358:359 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9PJ7_005 | 1/A/67:70, 1/A/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9PJ7_006 | 1/A/71:73, 1/A/99:102 | No text annotation | geometric IL_8B0X_006 IL_82096.1 | |
| IL_9PJ7_007 | 1/A/74:77, 1/A/97:98 | No text annotation | geometric IL_8B0X_007 IL_87975.1 | |
| IL_9PJ7_008 | 1/A/77:79, 1/A/93:97 | No text annotation | ||
| IL_9PJ7_009 | 1/A/129:132, 1/A/233:234 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_9PJ7_010 | 1/A/133:137, 1/A/229:232 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9PJ7_011 | 1/A/148:154, 1/A/169:176 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9PJ7_012 | 1/A/244:249, 1/A/279:286 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9PJ7_013 | 1/A/251:254, 1/A/276:277 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9PJ7_014 | 1/A/294:295, 1/A/306:310 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9PJ7_015 | 1/A/369:371, 1/A/394:395 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9PJ7_016 | 1/A/373:377, 1/A/391:392 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9PJ7_017 | 1/A/377:378, 1/A/389:391 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9PJ7_018 | 1/A/411:418, 1/A/429:435 | No text annotation | geometric IL_4LFB_017 IL_62329.1 | |
| IL_9PJ7_019 | 1/A/442:443, 1/A/475:479 | No text annotation | ||
| IL_9PJ7_020 | 1/A/448:452, 1/A/465:470 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_9PJ7_021 | 1/A/452:456, 1/A/461:465 | No text annotation | ||
| IL_9PJ7_022 | 1/A/486:493, 1/A/522:523 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9PJ7_023 | 1/A/497:503, 1/A/510:518 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9PJ7_024 | 1/A/551:557, 1/A/864:865 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9PJ7_025 | 1/A/562:566, 1/A/739:743 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9PJ7_026 | 1/A/576:578, 1/A/626:627 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_9PJ7_027 | 1/A/579:580, 1/A/622:625 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9PJ7_028 | 1/A/587:593, 1/A/611:615 | No text annotation | ||
| IL_9PJ7_029 | 1/A/636:637, 1/A/733:736 | No text annotation | geometric IL_8B0X_030 IL_74641.3 | |
| IL_9PJ7_030 | 1/A/639:641, 1/A/728:731 | No text annotation | ||
| IL_9PJ7_031 | 1/A/644:648, 1/A/722:725 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9PJ7_032 | 1/A/655:659, 1/A/695:699 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_9PJ7_033 | 1/A/666:670, 1/A/681:688 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9PJ7_034 | 1/A/756:760, 1/A/786:787 | Left turn | homologous IL_6CZR_144 NA | |
| IL_9PJ7_035 | 1/A/761:765, 1/A/781:785 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9PJ7_036 | 1/A/822:824, 1/A/828:830 | No text annotation | geometric IL_8GLP_297 IL_38565.3 | |
| IL_9PJ7_037 | 1/A/871:878, 1/A/889:894 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9PJ7_038 | 1/A/906:907, 1/A/1380:1382 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9PJ7_039 | 1/A/909:911, 1/A/1377:1378 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_9PJ7_040 | 1/A/917:919, 1/A/1367:1371 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_9PJ7_041 | 1/A/937:938, 1/A/1212:1214 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9PJ7_042 | 1/A/977:981, 1/A/1029:1030 | Minor groove platform | geometric IL_4LFB_039 IL_49794.1 | |
| IL_9PJ7_043 | 1/A/984:985, 1/A/1024:1026 | No text annotation | geometric IL_8GLP_098 IL_15011.4 | |
| IL_9PJ7_044 | 1/A/985:987, 1/A/1022:1024 | No text annotation | geometric IL_9TM6_001 IL_01003.5 | |
| IL_9PJ7_045 | 1/A/1033:1035, 1/A/1194:1195 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_9PJ7_046 | 1/A/1037:1041, 1/A/1190:1192 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9PJ7_047 | 1/A/1042:1043, 1/A/1185:1189 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_9PJ7_048 | 1/A/1045:1046, 1/A/1181:1183 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_9PJ7_049 | 1/A/1046:1048, 1/A/1179:1181 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_9PJ7_050 | 1/A/1109:1113, 1/A/1130:1135 | No text annotation | geometric IL_8B0X_050 IL_38603.1 | |
| IL_9PJ7_051 | 1/A/1114:1117, 1/A/1128:1129 | Minor groove platform | geometric IL_3MXH_005 IL_87975.1 | |
| IL_9PJ7_052 | 1/A/1144:1147, 1/A/1161:1167 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9PJ7_053 | 1/A/1233:1239, 1/A/1270:1276 | No text annotation | homologous IL_6CZR_160 NA | |
| IL_9PJ7_054 | 1/A/1241:1244, 1/A/1263:1268 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_9PJ7_055 | 1/A/1245:1248, 1/A/1259:1262 | No text annotation | homologous IL_6CZR_367 NA | |
| IL_9PJ7_056 | 1/A/1289:1294, 1/A/1315:1320 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_9PJ7_057 | 1/A/1386:1388, 1/A/1488:1491 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9PJ7_058 | 1/A/1388:1391, 1/A/1484:1488 | No text annotation | homologous IL_6CZR_368 NA | |
| IL_9PJ7_059 | 1/A/1392:1394, 1/A/1481:1483 | No text annotation | geometric IL_8B0X_177 IL_01003.5 | |
| IL_9PJ7_060 | 1/A/1394:1396, 1/A/1478:1481 | Isolated non-canonical cWW pair | geometric IL_4P3U_001 IL_01003.5 | |
| IL_9PJ7_061 | 1/A/1399:1401, 1/A/1473:1475 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9PJ7_062 | 1/A/1403:1406, 1/A/1468:1471 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9PJ7_063 | 1/A/1411:1414, 1/A/1460:1463 | No text annotation | geometric IL_9H3G_114 IL_15225.3 | |
| IL_9PJ7_064 | 1/A/1417:1422, 1/A/1453:1457 | No text annotation | geometric IL_8GLP_051 IL_47352.3 | |
| IL_9PJ7_065 | 1/A/1422:1424, 1/A/1451:1453 | Isolated non-canonical cWW pair | homologous IL_6CZR_171 NA | |
| IL_9PJ7_066 | 1/A/1427:1430, 1/A/1446:1448 | No text annotation | ||
| IL_9PJ7_067 | 1/A/1432:1435, 1/A/1442:1444 | No text annotation | geometric IL_8B0X_064 IL_05502.1 | |
| IL_9PJ7_068 | 1/a/2:4, 1/a/3078:3080 | No text annotation | ||
| IL_9PJ7_069 | 1/a/23:29, 1/a/598:604 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.2 | |
| IL_9PJ7_070 | 1/a/35:36, 1/a/531:533 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_9PJ7_071 | 1/a/42:43, 1/a/523:525 | Minor groove platform | homologous IL_7A0S_003 IL_34520.4 | |
| IL_9PJ7_072 | 1/a/80:84, 1/a/97:104 | Kink-turn | geometric IL_6UFG_001 IL_71972.2 | |
| IL_9PJ7_073 | 1/a/131:137, 1/a/152:153 | No text annotation | ||
| IL_9PJ7_074 | 1/a/158:160, 1/a/178:181 | No text annotation | geometric IL_8CRE_403 IL_36931.3 | |
| IL_9PJ7_075 | 1/a/190:191, 1/a/219:221 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_9PJ7_076 | 1/a/195:201, 1/a/208:215 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.4 | |
| IL_9PJ7_077 | 1/a/246:252, 1/a/260:265 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_9E6Q_007 IL_02666.2 | |
| IL_9PJ7_078 | 1/a/328:329, 1/a/452:455 | No text annotation | ||
| IL_9PJ7_079 | 1/a/371:380, 1/a/428:440 | No text annotation | ||
| IL_9PJ7_080 | 1/a/570:573, 1/a/584:597 | No text annotation | geometric IL_8B0X_075 IL_44923.2 | |
| IL_9PJ7_081 | 1/a/624:627, 1/a/637:640 | No text annotation | geometric IL_8B0X_076 IL_58355.3 | |
| IL_9PJ7_082 | 1/a/647:649, 1/a/658:660 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_9PJ7_083 | 1/a/674:676, 1/a/750:751 | Single bulged A | homologous IL_7A0S_012 IL_14190.3 | |
| IL_9PJ7_084 | 1/a/690:694, 1/a/704:708 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9PJ7_085 | 1/a/757:759, 1/a/891:893 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_9PJ7_086 | 1/a/759:763, 1/a/884:891 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_9PJ7_087 | 1/a/782:783, 1/a/848:850 | Single bulged A | homologous IL_7A0S_016 IL_14190.3 | |
| IL_9PJ7_088 | 1/a/787:788, 1/a/813:815 | Single bulged G | homologous IL_7A0S_017 IL_28408.3 | |
| IL_9PJ7_089 | 1/a/788:792, 1/a/809:813 | No text annotation | geometric IL_8B0X_083 IL_15190.3 | |
| IL_9PJ7_090 | 1/a/794:796, 1/a/805:807 | No text annotation | geometric IL_9H3G_050 IL_71625.4 | |
| IL_9PJ7_091 | 1/a/823:825, 1/a/842:843 | Major groove platform | geometric IL_4WF9_026 IL_48076.9 | |
| IL_9PJ7_092 | 1/a/860:862, 1/a/872:876 | Multiple bulged bases | homologous IL_7A0S_021 IL_89509.2 | |
| IL_9PJ7_093 | 1/a/922:923, 1/a/1023:1025 | Single stack bend | homologous IL_7A0S_022 IL_15011.4 | |
| IL_9PJ7_094 | 1/a/929:932, 1/a/1016:1017 | No text annotation | geometric IL_8B0X_109 IL_74641.3 | |
| IL_9PJ7_095 | 1/a/929:934, 1/a/1012:1017 | No text annotation | ||
| IL_9PJ7_096 | 1/a/932:934, 1/a/1012:1016 | No text annotation | ||
| IL_9PJ7_097 | 1/a/941:947, 1/a/999:1005 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8B0X_090 IL_94128.2 | |
| IL_9PJ7_098 | 1/a/947:948, 1/a/997:999 | Minor groove platform | homologous IL_7A0S_028 IL_34520.4 | |
| IL_9PJ7_099 | 1/a/949:953, 1/a/993:996 | C-loop | homologous IL_7A0S_029 IL_16301.2 | |
| IL_9PJ7_100 | 1/a/955:957, 1/a/989:991 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_42997.6 | |
| IL_9PJ7_101 | 1/a/960:964, 1/a/982:986 | No text annotation | geometric IL_9H3G_004 IL_87767.3 | |
| IL_9PJ7_102 | 1/a/965:967, 1/a/978:981 | No text annotation | geometric IL_9E6Q_079 IL_87316.3 | |
| IL_9PJ7_103 | 1/a/1077:1079, 1/a/1243:1244 | Single bulged C | homologous IL_7A0S_032 IL_05642.4 | |
| IL_9PJ7_104 | 1/a/1081:1085, 1/a/1237:1241 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_9PJ7_105 | 1/a/1087:1094, 1/a/1234:1235 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.1 | |
| IL_9PJ7_106 | 1/a/1094:1096, 1/a/1233:1234 | Single bulged U | homologous IL_7A0S_035 IL_97561.6 | |
| IL_9PJ7_107 | 1/a/1101:1107, 1/a/1223:1228 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9PJ7_108 | 1/a/1107:1113, 1/a/1207:1223 | No text annotation | geometric IL_8B0X_101 IL_50715.4 | |
| IL_9PJ7_109 | 1/a/1114:1117, 1/a/1204:1206 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.2 | |
| IL_9PJ7_110 | 1/a/1126:1134, 1/a/1191:1195 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_9PJ7_112 | 1/a/1273:1275, 1/a/1324:1327 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.6 | |
| IL_9PJ7_113 | 1/a/1284:1291, 1/a/1311:1315 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_9PJ7_114 | 1/a/1295:1296, 1/a/1305:1307 | Single bulged U | geometric IL_4O26_001 IL_97561.6 | |
| IL_9PJ7_115 | 1/a/1339:1346, 1/a/2194:2200 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_9PJ7_116 | 1/a/1386:1389, 1/a/1787:1788 | No text annotation | geometric IL_8B0X_109 IL_74641.3 | |
| IL_9PJ7_117 | 1/a/1395:1399, 1/a/1407:1409 | C-loop | homologous IL_7A0S_047 IL_06671.2 | |
| IL_9PJ7_118 | 1/a/1427:1431, 1/a/1452:1456 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9PJ7_119 | 1/a/1433:1437, 1/a/1446:1450 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_9PJ7_120 | 1/a/1483:1485, 1/a/1777:1779 | No text annotation | geometric IL_8GLP_039 IL_01003.5 | |
| IL_9PJ7_121 | 1/a/1486:1489, 1/a/1773:1776 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.3 | |
| IL_9PJ7_122 | 1/a/1489:1492, 1/a/1770:1773 | No text annotation | geometric IL_9AXU_094 IL_15225.3 | |
| IL_9PJ7_123 | 1/a/1597:1599, 1/a/1762:1765 | No text annotation | ||
| IL_9PJ7_124 | 1/a/1612:1615, 1/a/1740:1744 | No text annotation | geometric IL_8B0X_115 IL_28284.1 | |
| IL_9PJ7_125 | 1/a/1617:1620, 1/a/1734:1738 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_9PJ7_126 | 1/a/1649:1652, 1/a/1702:1706 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9PJ7_127 | 1/a/1655:1659, 1/a/1695:1699 | tSH-tWH-tHS | geometric IL_8CRE_438 IL_05821.2 | |
| IL_9PJ7_128 | 1/a/1662:1663, 1/a/1686:1692 | No text annotation | ||
| IL_9PJ7_129 | 1/a/1669:1671, 1/a/1679:1680 | No text annotation | geometric IL_8B0X_121 IL_14190.3 | |
| IL_9PJ7_131 | 1/a/1835:1840, 1/a/2187:2189 | No text annotation | ||
| IL_9PJ7_132 | 1/a/1847:1849, 1/a/2178:2180 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_9PJ7_133 | 1/a/1850:1853, 1/a/2176:2177 | No text annotation | geometric IL_9E6Q_063 IL_74641.3 | |
| IL_9PJ7_134 | 1/a/1850:1858, 1/a/2173:2177 | No text annotation | geometric IL_8B0X_180 IL_80252.2 | |
| IL_9PJ7_135 | 1/a/1853:1858, 1/a/2173:2176 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.2 | |
| IL_9PJ7_136 | 1/a/1870:1875, 1/a/1880:1886 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.2 | |
| IL_9PJ7_137 | 1/a/1894:1898, 1/a/1927:1931 | No text annotation | geometric IL_8GLP_204 IL_87767.3 | |
| IL_9PJ7_138 | 1/a/1902:1909, 1/a/1916:1923 | No text annotation | ||
| IL_9PJ7_139 | 1/a/1953:1954, 1/a/2163:2165 | Single bulged A | homologous IL_7A0S_064 IL_14190.3 | |
| IL_9PJ7_140 | 1/a/1981:1987, 1/a/1996:2004 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9PJ7_141 | 1/a/2020:2023, 1/a/2085:2086 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.2 | |
| IL_9PJ7_142 | 1/a/2024:2025, 1/a/2081:2084 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_9PJ7_143 | 1/a/2029:2032, 1/a/2076:2077 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.3 | |
| IL_9PJ7_144 | 1/a/2034:2038, 1/a/2070:2074 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9PJ7_145 | 1/a/2039:2043, 1/a/2065:2069 | Triple sheared | homologous IL_7A0S_070 IL_15190.3 | |
| IL_9PJ7_146 | 1/a/2047:2050, 1/a/2057:2061 | UAA/GAN variation | geometric IL_4V9F_094 IL_45790.2 | |
| IL_9PJ7_147 | 1/a/2116:2117, 1/a/2147:2150 | No text annotation | geometric IL_8B0X_137 IL_24886.3 | |
| IL_9PJ7_148 | 1/a/2117:2128, 1/a/2144:2147 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9PJ7_149 | 1/a/2233:2235, 1/a/2799:2800 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_9PJ7_150 | 1/a/2237:2239, 1/a/2794:2797 | No text annotation | geometric IL_8B0X_140 IL_80025.2 | |
| IL_9PJ7_151 | 1/a/2252:2253, 1/a/2620:2623 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_9PJ7_152 | 1/a/2263:2265, 1/a/2418:2421 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.3 | |
| IL_9PJ7_153 | 1/a/2267:2269, 1/a/2414:2416 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_9PJ7_154 | 1/a/2383:2385, 1/a/2403:2404 | No text annotation | geometric IL_8GLP_072 IL_28408.3 | |
| IL_9PJ7_155 | 1/a/2479:2481, 1/a/2499:2503 | Isolated tHS basepair with bulges | homologous IL_7A0S_080 IL_14250.2 | |
| IL_9PJ7_156 | 1/a/2532:2535, 1/a/2546:2549 | Double sheared | homologous IL_7A0S_081 IL_58355.3 | |
| IL_9PJ7_157 | 1/a/2583:2585, 1/a/2596:2597 | Major groove platform | geometric IL_8TSV_001 IL_48076.9 | |
| IL_9PJ7_158 | 1/a/2635:2636, 1/a/2680:2682 | Single stack bend | homologous IL_7A0S_083 IL_15011.4 | |
| IL_9PJ7_159 | 1/a/2636:2637, 1/a/2678:2680 | Major groove platform | homologous IL_7A0S_084 IL_48076.9 | |
| IL_9PJ7_160 | 1/a/2639:2641, 1/a/2675:2676 | Major groove platform | homologous IL_7A0S_085 IL_48076.9 | |
| IL_9PJ7_161 | 1/a/2641:2643, 1/a/2671:2675 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.3 | |
| IL_9PJ7_162 | 1/a/2643:2645, 1/a/2669:2671 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_71625.4 | |
| IL_9PJ7_163 | 1/a/2648:2652, 1/a/2662:2666 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_9PJ7_164 | 1/a/2689:2690, 1/a/2762:2764 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_9PJ7_165 | 1/a/2692:2694, 1/a/2756:2760 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_9PJ7_166 | 1/a/2694:2695, 1/a/2753:2756 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.3 | |
| IL_9PJ7_167 | 1/a/2704:2705, 1/a/2722:2725 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_9PJ7_168 | 1/a/2773:2774, 1/a/2783:2785 | No text annotation | geometric IL_8GLP_154 IL_14190.3 | |
| IL_9PJ7_169 | 1/a/2818:2822, 1/a/2956:2964 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9PJ7_170 | 1/a/2834:2840, 1/a/2845:2850 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9PJ7_171 | 1/a/2862:2866, 1/a/2907:2909 | C-loop | homologous IL_7A0S_095 IL_63596.13 | |
| IL_9PJ7_172 | 1/a/2869:2872, 1/a/2901:2904 | No text annotation | ||
| IL_9PJ7_173 | 1/a/2877:2878, 1/a/2893:2896 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.3 | |
| IL_9PJ7_174 | 1/a/2919:2924, 1/a/2944:2949 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9PJ7_175 | 1/a/3018:3019, 1/a/3058:3060 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_9PJ7_176 | 1/a/3023:3026, 1/a/3050:3054 | No text annotation | geometric IL_9DFE_108 IL_34942.1 | |
| IL_9PJ7_177 | 1/a/3027:3032, 1/a/3045:3049 | No text annotation | homologous IL_7A0S_101 IL_48489.2 | |
| IL_9PJ7_179 | 1/b/17:18, 1/b/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.3 | |
| IL_9PJ7_180 | 1/b/23:29, 1/b/55:60 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_9PJ7_181 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_9PJ7_182 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.13 | |
| IL_9PJ7_183 | 1/b/71:79, 1/b/98:106 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9PJ7_111 | No text annotation | ||
| IL_9PJ7_130 | No text annotation | ||
| IL_9PJ7_178 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9PJ7_001 | 1/A/50:51, 1/A/363:369, 1/A/395:397 | No text annotation | geometric J3_8B0X_001 J3_58657.2 | |
| J3_9PJ7_002 | 1/A/50:56, 1/A/361:369, 1/A/395:397 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9PJ7_003 | 1/A/568:570, 1/A/633:636, 1/A/736:737 | No text annotation | geometric J3_8B0X_002 J3_01633.2 | |
| J3_9PJ7_004 | 1/A/568:570, 1/A/633:637, 1/A/733:737 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_9PJ7_005 | 1/A/654:655, 1/A/699:707, 1/A/714:716 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9PJ7_006 | 1/A/808:811, 1/A/841:845, 1/A/852:858 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9PJ7_007 | 1/A/920:923, 1/A/1330:1336, 1/A/1359:1366 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_9PJ7_008 | 1/A/927:930, 1/A/1221:1223, 1/A/1323:1326 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_9PJ7_009 | 1/A/939:946, 1/A/957:968, 1/A/1207:1211 | No text annotation | geometric J3_8B0X_007 J3_88451.2 | |
| J3_9PJ7_010 | 1/A/974:977, 1/A/1030:1032, 1/A/1196:1201 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9PJ7_011 | 1/A/974:981, 1/A/1029:1032, 1/A/1196:1201 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_9PJ7_013 | 1/A/1048:1053, 1/A/1092:1098, 1/A/1173:1179 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_9PJ7_014 | 1/A/1058:1059, 1/A/1068:1071, 1/A/1084:1087 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_9PJ7_015 | 1/A/1101:1103, 1/A/1141:1144, 1/A/1167:1170 | No text annotation | geometric J3_8B0X_012 J3_82365.6 | |
| J3_9PJ7_016 | 1/A/1101:1103, 1/A/1141:1147, 1/A/1161:1170 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_9PJ7_017 | 1/A/1223:1227, 1/A/1282:1289, 1/A/1320:1323 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_9PJ7_018 | 1/a/29:30, 1/a/563:570, 1/a/597:598 | No text annotation | geometric J3_8B0X_014 J3_68715.2 | |
| J3_9PJ7_019 | 1/a/29:30, 1/a/563:573, 1/a/584:598 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_9PJ7_020 | 1/a/31:34, 1/a/534:550, 1/a/557:562 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_9PJ7_021 | 1/a/55:56, 1/a/69:75, 1/a/109:113 | No text annotation | homologous J3_7A0S_002 J3_01004.2 | |
| J3_9PJ7_022 | 1/a/323:325, 1/a/458:464, 1/a/488:493 | No text annotation | ||
| J3_9PJ7_023 | 1/a/333:341, 1/a/350:370, 1/a/441:448 | No text annotation | ||
| J3_9PJ7_024 | 1/a/382:386, 1/a/401:410, 1/a/422:426 | No text annotation | geometric J3_8B0X_034 J3_77124.1 | |
| J3_9PJ7_025 | 1/a/768:774, 1/a/858:860, 1/a/876:879 | No text annotation | homologous J3_7A0S_004 J3_46658.2 | |
| J3_9PJ7_026 | 1/a/783:785, 1/a/817:821, 1/a/845:848 | No text annotation | homologous J3_7A0S_005 J3_69816.2 | |
| J3_9PJ7_028 | 1/a/1374:1379, 1/a/1809:1811, 1/a/1823:1826 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9PJ7_029 | 1/a/1382:1385, 1/a/1789:1795, 1/a/1804:1806 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9PJ7_030 | 1/a/1420:1426, 1/a/1457:1461, 1/a/1478:1479 | No text annotation | homologous J3_7A0S_018 J3_94309.2 | |
| J3_9PJ7_031 | 1/a/1604:1609, 1/a/1747:1748, 1/a/1751:1757 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9PJ7_032 | 1/a/2273:2275, 1/a/2378:2382, 1/a/2405:2410 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_9PJ7_033 | 1/a/2464:2466, 1/a/2566:2577, 1/a/2603:2609 | No text annotation | homologous J3_7A0S_020 J3_04772.2 | |
| J3_9PJ7_034 | 1/a/2477:2479, 1/a/2503:2505, 1/a/2514:2519 | No text annotation | homologous J3_7A0S_010 J3_05327.2 | |
| J3_9PJ7_035 | 1/a/2699:2702, 1/a/2727:2729, 1/a/2743:2749 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9PJ7_036 | 1/a/2994:2995, 1/a/3011:3016, 1/a/3062:3066 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_9PJ7_037 | 1/b/11:16, 1/b/68:70, 1/b/107:110 | No text annotation | ||
| J4_9PJ7_001 | 1/A/115:123, 1/A/240:242, 1/A/288:291, 1/A/313:314 | No text annotation | ||
| J4_9PJ7_002 | 1/A/144:145, 1/A/179:185, 1/A/208:214, 1/A/221:222 | No text annotation | ||
| J4_9PJ7_003 | 1/A/557:559, 1/A/746:751, 1/A/792:803, 1/A/863:864 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_9PJ7_004 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.2 | |
| J4_9PJ7_005 | 1/a/275:280, 1/a/318:323, 1/a/493:495, 1/a/510:513 | No text annotation | ||
| J4_9PJ7_006 | 1/a/382:386, 1/a/401:404, 1/a/408:410, 1/a/422:426 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9PJ7_007 | 1/a/685:688, 1/a/710:714, 1/a/721:724, 1/a/736:741 | No text annotation | ||
| J4_9PJ7_008 | 1/a/1347:1352, 1/a/1370:1371, 1/a/1829:1832, 1/a/2192:2193 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_9PJ7_009 | 1/a/1386:1390, 1/a/1414:1419, 1/a/1480:1481, 1/a/1781:1788 | No text annotation | ||
| J4_9PJ7_010 | 1/a/1389:1390, 1/a/1414:1419, 1/a/1480:1481, 1/a/1781:1787 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_9PJ7_011 | 1/a/1624:1626, 1/a/1647:1648, 1/a/1707:1712, 1/a/1724:1730 | No text annotation | ||
| J4_9PJ7_012 | 1/a/1955:1959, 1/a/1971:1975, 1/a/2010:2013, 1/a/2158:2162 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9PJ7_013 | 1/a/2016:2018, 1/a/2088:2089, 1/a/2107:2116, 1/a/2150:2155 | No text annotation | ||
| J4_9PJ7_014 | 1/a/2467:2471, 1/a/2525:2529, 1/a/2552:2554, 1/a/2563:2565 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9PJ7_015 | 1/a/2825:2828, 1/a/2856:2858, 1/a/2913:2917, 1/a/2951:2953 | No text annotation | ||
| J5_9PJ7_001 | 1/A/40:43, 1/A/405:408, 1/A/438:442, 1/A/479:482, 1/A/527:530 | No text annotation | ||
| J5_9PJ7_002 | 1/A/40:43, 1/A/405:408, 1/A/438:443, 1/A/475:482, 1/A/527:530 | No text annotation | ||
| J5_9PJ7_003 | 1/A/62:65, 1/A/106:113, 1/A/316:318, 1/A/339:341, 1/A/352:356 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_9PJ7_004 | 1/a/46:53, 1/a/115:120, 1/a/129:131, 1/a/153:156, 1/a/183:185 | No text annotation | ||
| J5_9PJ7_005 | 1/a/275:280, 1/a/318:325, 1/a/458:464, 1/a/488:495, 1/a/510:513 | No text annotation | ||
| J5_9PJ7_006 | 1/a/619:621, 1/a/643:647, 1/a/660:662, 1/a/1338:1339, 1/a/2200:2201 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9PJ7_007 | 1/a/667:672, 1/a/753:756, 1/a/894:897, 1/a/1272:1273, 1/a/1327:1333 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_9PJ7_008 | 1/a/1858:1866, 1/a/1890:1892, 1/a/1933:1935, 1/a/1939:1947, 1/a/2171:2173 | No text annotation | ||
| J5_9PJ7_009 | 1/a/2240:2247, 1/a/2628:2635, 1/a/2682:2689, 1/a/2764:2770, 1/a/2788:2793 | No text annotation | ||
| J5_9PJ7_010 | 1/a/2256:2259, 1/a/2425:2428, 1/a/2440:2441, 1/a/2463:2464, 1/a/2609:2617 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9PJ7_001 | 1/a/44:45, 1/a/186:190, 1/a/221:231, 1/a/238:242, 1/a/269:273, 1/a/515:522 | No text annotation | ||
| J6_9PJ7_002 | 1/a/2256:2259, 1/a/2425:2428, 1/a/2440:2441, 1/a/2463:2466, 1/a/2566:2577, 1/a/2603:2617 | No text annotation | ||
| J7_9PJ7_001 | 1/a/902:907, 1/a/920:921, 1/a/1026:1029, 1/a/1054:1059, 1/a/1070:1074, 1/a/1247:1248, 1/a/1262:1267 | No text annotation | ||
| J8_9PJ7_001 | 1/a/6:14, 1/a/613:619, 1/a/2201:2206, 1/a/2223:2226, 1/a/2807:2812, 1/a/2970:2973, 1/a/2986:2991, 1/a/3069:3076 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9PJ7_012 | No text annotation | ||
| J3_9PJ7_027 | No text annotation |
Coloring options: