HL_9PJ7_019

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_019 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.1051

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9PJ7|1|A|C|881
9PJ7|1|A|G|882
9PJ7|1|A|C|883
9PJ7|1|A|A|884
9PJ7|1|A|A|885
9PJ7|1|A|G|886

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

AURKAIP1/COX24 domain-containing protein

Chain a

Large subunit ribosomal RNA; LSU rRNA