HL_9PJ7_028
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 9PJ7|1|A|A|1349, 9PJ7|1|A|C|1351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ7_028 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.1888
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ7|1|A|G|1342
9PJ7|1|A|A|1343
9PJ7|1|A|U|1344
9PJ7|1|A|C|1345
9PJ7|1|A|A|1346
9PJ7|1|A|G|1347
9PJ7|1|A|C|1348
9PJ7|1|A|A|1349
9PJ7|1|A|A|1350
9PJ7|1|A|C|1351
9PJ7|1|A|G|1352
9PJ7|1|A|C|1353
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S9
- Chain M
- Small ribosomal subunit protein uS10
- Chain N
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14 type Z
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