HL_9PJ7_061

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_061 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2019

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9PJ7|1|a|G|1061
9PJ7|1|a|A|1062
9PJ7|1|a|A|1063
9PJ7|1|a|A|1064
9PJ7|1|a|C|1065
9PJ7|1|a|A|1066
9PJ7|1|a|G|1067
9PJ7|1|a|C|1068

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain y

50S ribosomal protein L30