HL_9PJ7_077

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCGUGCGG

Length

8 nucleotides

Bulged bases

9PJ7|1|a|G|1911, 9PJ7|1|a|U|1912, 9PJ7|1|a|G|1913, 9PJ7|1|a|G|1915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_077 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.3547

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64374.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9PJ7|1|a|C|1909
9PJ7|1|a|C|1910
9PJ7|1|a|G|1911
9PJ7|1|a|U|1912
9PJ7|1|a|G|1913
9PJ7|1|a|C|1914
9PJ7|1|a|G|1915
9PJ7|1|a|G|1916

Current chains

Chain a

23S rRNA

Nearby chains