HL_9PJ7_079
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9PJ7|1|a|A|1963, 9PJ7|1|a|C|1964, 9PJ7|1|a|C|1965, 9PJ7|1|a|A|1969
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ7_079 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.0529
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9PJ7|1|a|U|1960
9PJ7|1|a|U|1961
9PJ7|1|a|U|1962
9PJ7|1|a|A|1963
9PJ7|1|a|C|1964
9PJ7|1|a|C|1965
9PJ7|1|a|A|1966
9PJ7|1|a|A|1967
9PJ7|1|a|A|1968
9PJ7|1|a|A|1969
9PJ7|1|a|A|1970
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: