HL_9PJ8_014
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGGUGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ8_014 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1185
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9PJ8|1|A|C|671
9PJ8|1|A|G|672
9PJ8|1|A|G|673
9PJ8|1|A|U|674
9PJ8|1|A|G|675
9PJ8|1|A|G|676
9PJ8|1|A|A|677
9PJ8|1|A|A|678
9PJ8|1|A|U|679
9PJ8|1|A|G|680
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain Y
- mRNA 32MF
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: